Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
1 |
| CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-35 | -8.282e+01 | 0.0000 | 52.0 | 6.11% | 252.1 | 0.54% | motif file (matrix) |
svg |
2 |
| E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer | 1e-33 | -7.676e+01 | 0.0000 | 146.0 | 17.16% | 2551.8 | 5.48% | motif file (matrix) |
svg |
3 |
| E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer | 1e-29 | -6.743e+01 | 0.0000 | 161.0 | 18.92% | 3291.2 | 7.06% | motif file (matrix) |
svg |
4 |
| E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer | 1e-24 | -5.704e+01 | 0.0000 | 142.0 | 16.69% | 2963.4 | 6.36% | motif file (matrix) |
svg |
5 |
| E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer | 1e-21 | -4.963e+01 | 0.0000 | 56.0 | 6.58% | 608.1 | 1.31% | motif file (matrix) |
svg |
6 |
| E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer | 1e-20 | -4.726e+01 | 0.0000 | 86.0 | 10.11% | 1438.5 | 3.09% | motif file (matrix) |
svg |
7 |
| FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer | 1e-18 | -4.248e+01 | 0.0000 | 77.0 | 9.05% | 1284.9 | 2.76% | motif file (matrix) |
svg |
8 |
| BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-18 | -4.245e+01 | 0.0000 | 59.0 | 6.93% | 789.3 | 1.69% | motif file (matrix) |
svg |
9 |
| FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer | 1e-18 | -4.148e+01 | 0.0000 | 88.0 | 10.34% | 1644.9 | 3.53% | motif file (matrix) |
svg |
10 |
| FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer | 1e-16 | -3.756e+01 | 0.0000 | 75.0 | 8.81% | 1344.7 | 2.89% | motif file (matrix) |
svg |
11 |
| Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer | 1e-12 | -2.901e+01 | 0.0000 | 56.0 | 6.58% | 985.2 | 2.11% | motif file (matrix) |
svg |
12 |
| Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer | 1e-11 | -2.735e+01 | 0.0000 | 149.0 | 17.51% | 4507.8 | 9.67% | motif file (matrix) |
svg |
13 |
| Sp1(Zf)/Promoter/Homer | 1e-10 | -2.440e+01 | 0.0000 | 79.0 | 9.28% | 1902.6 | 4.08% | motif file (matrix) |
svg |
14 |
| Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer | 1e-10 | -2.433e+01 | 0.0000 | 60.0 | 7.05% | 1244.0 | 2.67% | motif file (matrix) |
svg |
15 |
| Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer | 1e-9 | -2.282e+01 | 0.0000 | 29.0 | 3.41% | 367.2 | 0.79% | motif file (matrix) |
svg |
16 |
| Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer | 1e-9 | -2.217e+01 | 0.0000 | 21.0 | 2.47% | 196.9 | 0.42% | motif file (matrix) |
svg |
17 |
| RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer | 1e-9 | -2.208e+01 | 0.0000 | 21.0 | 2.47% | 197.6 | 0.42% | motif file (matrix) |
svg |
18 |
| X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-7 | -1.778e+01 | 0.0000 | 17.0 | 2.00% | 164.3 | 0.35% | motif file (matrix) |
svg |
19 |
| FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer | 1e-7 | -1.735e+01 | 0.0000 | 48.0 | 5.64% | 1076.0 | 2.31% | motif file (matrix) |
svg |
20 |
| KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer | 1e-7 | -1.709e+01 | 0.0000 | 148.0 | 17.39% | 5190.4 | 11.14% | motif file (matrix) |
svg |
21 |
| HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer | 1e-7 | -1.661e+01 | 0.0000 | 57.0 | 6.70% | 1427.0 | 3.06% | motif file (matrix) |
svg |
22 |
| GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer | 1e-7 | -1.634e+01 | 0.0000 | 27.0 | 3.17% | 437.7 | 0.94% | motif file (matrix) |
svg |
23 |
| E2F(E2F)/Hela-CellCycle-Expression/Homer | 1e-6 | -1.597e+01 | 0.0000 | 19.0 | 2.23% | 233.6 | 0.50% | motif file (matrix) |
svg |
24 |
| HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer | 1e-6 | -1.584e+01 | 0.0000 | 56.0 | 6.58% | 1424.7 | 3.06% | motif file (matrix) |
svg |
25 |
| Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer | 1e-6 | -1.466e+01 | 0.0000 | 14.0 | 1.65% | 138.4 | 0.30% | motif file (matrix) |
svg |
26 |
| Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer | 1e-6 | -1.449e+01 | 0.0000 | 43.0 | 5.05% | 1009.1 | 2.17% | motif file (matrix) |
svg |
27 |
| NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-6 | -1.421e+01 | 0.0000 | 39.0 | 4.58% | 880.2 | 1.89% | motif file (matrix) |
svg |
28 |
| NFY(CCAAT)/Promoter/Homer | 1e-6 | -1.401e+01 | 0.0000 | 57.0 | 6.70% | 1549.7 | 3.33% | motif file (matrix) |
svg |
29 |
| KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer | 1e-5 | -1.353e+01 | 0.0000 | 185.0 | 21.74% | 7259.3 | 15.58% | motif file (matrix) |
svg |
30 |
| GFY(?)/Promoter/Homer | 1e-5 | -1.312e+01 | 0.0000 | 15.0 | 1.76% | 181.4 | 0.39% | motif file (matrix) |
svg |
31 |
| FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer | 1e-5 | -1.297e+01 | 0.0000 | 53.0 | 6.23% | 1448.1 | 3.11% | motif file (matrix) |
svg |
32 |
| Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer | 1e-5 | -1.280e+01 | 0.0000 | 45.0 | 5.29% | 1153.4 | 2.48% | motif file (matrix) |
svg |
33 |
| KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer | 1e-5 | -1.247e+01 | 0.0000 | 63.0 | 7.40% | 1871.8 | 4.02% | motif file (matrix) |
svg |
34 |
| Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-5 | -1.209e+01 | 0.0001 | 21.0 | 2.47% | 362.7 | 0.78% | motif file (matrix) |
svg |
35 |
| FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer | 1e-5 | -1.203e+01 | 0.0001 | 36.0 | 4.23% | 858.5 | 1.84% | motif file (matrix) |
svg |
36 |
| Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer | 1e-5 | -1.203e+01 | 0.0001 | 96.0 | 11.28% | 3301.2 | 7.08% | motif file (matrix) |
svg |
37 |
| Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer | 1e-5 | -1.154e+01 | 0.0001 | 26.0 | 3.06% | 533.6 | 1.15% | motif file (matrix) |
svg |
38 |
| FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer | 1e-4 | -1.145e+01 | 0.0001 | 27.0 | 3.17% | 569.5 | 1.22% | motif file (matrix) |
svg |
39 |
| GFY-Staf(?,Zf)/Promoter/Homer | 1e-4 | -1.136e+01 | 0.0001 | 13.0 | 1.53% | 160.9 | 0.35% | motif file (matrix) |
svg |
40 |
| ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer | 1e-4 | -9.764e+00 | 0.0005 | 98.0 | 11.52% | 3594.9 | 7.72% | motif file (matrix) |
svg |
41 |
| GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-4 | -9.693e+00 | 0.0005 | 8.0 | 0.94% | 71.4 | 0.15% | motif file (matrix) |
svg |
42 |
| NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-4 | -9.455e+00 | 0.0007 | 108.0 | 12.69% | 4084.4 | 8.77% | motif file (matrix) |
svg |
43 |
| Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer | 1e-4 | -9.381e+00 | 0.0007 | 34.0 | 4.00% | 901.1 | 1.93% | motif file (matrix) |
svg |
44 |
| CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer | 1e-3 | -9.113e+00 | 0.0009 | 40.0 | 4.70% | 1147.6 | 2.46% | motif file (matrix) |
svg |
45 |
| Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer | 1e-3 | -8.293e+00 | 0.0020 | 28.0 | 3.29% | 727.9 | 1.56% | motif file (matrix) |
svg |
46 |
| Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer | 1e-3 | -8.261e+00 | 0.0020 | 31.0 | 3.64% | 842.7 | 1.81% | motif file (matrix) |
svg |
47 |
| GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer | 1e-3 | -8.177e+00 | 0.0022 | 70.0 | 8.23% | 2484.1 | 5.33% | motif file (matrix) |
svg |
48 |
| EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer | 1e-3 | -8.153e+00 | 0.0022 | 44.0 | 5.17% | 1367.6 | 2.93% | motif file (matrix) |
svg |
49 |
| Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer | 1e-3 | -8.129e+00 | 0.0022 | 45.0 | 5.29% | 1411.0 | 3.03% | motif file (matrix) |
svg |
50 |
| ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer | 1e-3 | -7.866e+00 | 0.0028 | 25.0 | 2.94% | 635.1 | 1.36% | motif file (matrix) |
svg |
51 |
| Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer | 1e-3 | -7.753e+00 | 0.0031 | 20.0 | 2.35% | 460.7 | 0.99% | motif file (matrix) |
svg |
52 |
| Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer | 1e-3 | -7.622e+00 | 0.0034 | 25.0 | 2.94% | 646.4 | 1.39% | motif file (matrix) |
svg |
53 |
| MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer | 1e-3 | -7.588e+00 | 0.0035 | 42.0 | 4.94% | 1322.0 | 2.84% | motif file (matrix) |
svg |
54 |
| BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer | 1e-3 | -7.408e+00 | 0.0041 | 76.0 | 8.93% | 2828.1 | 6.07% | motif file (matrix) |
svg |
55 |
| KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer | 1e-3 | -7.290e+00 | 0.0045 | 108.0 | 12.69% | 4335.6 | 9.30% | motif file (matrix) |
svg |
56 |
| E-box(bHLH)/Promoter/Homer | 1e-3 | -7.199e+00 | 0.0049 | 11.0 | 1.29% | 185.0 | 0.40% | motif file (matrix) |
svg |
57 |
| REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer | 1e-3 | -7.081e+00 | 0.0054 | 5.0 | 0.59% | 39.2 | 0.08% | motif file (matrix) |
svg |
58 |
| n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer | 1e-3 | -7.020e+00 | 0.0056 | 43.0 | 5.05% | 1404.3 | 3.01% | motif file (matrix) |
svg |
59 |
| Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer | 1e-3 | -6.924e+00 | 0.0061 | 131.0 | 15.39% | 5494.8 | 11.79% | motif file (matrix) |
svg |
60 |
| Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer | 1e-2 | -6.685e+00 | 0.0076 | 87.0 | 10.22% | 3417.6 | 7.33% | motif file (matrix) |
svg |
61 |
| Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer | 1e-2 | -6.653e+00 | 0.0077 | 169.0 | 19.86% | 7417.5 | 15.92% | motif file (matrix) |
svg |
62 |
| TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer | 1e-2 | -6.116e+00 | 0.0130 | 8.0 | 0.94% | 123.8 | 0.27% | motif file (matrix) |
svg |
63 |
| Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-2 | -6.079e+00 | 0.0132 | 26.0 | 3.06% | 764.3 | 1.64% | motif file (matrix) |
svg |
64 |
| Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer | 1e-2 | -6.023e+00 | 0.0138 | 58.0 | 6.82% | 2150.5 | 4.62% | motif file (matrix) |
svg |
65 |
| Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.993e+00 | 0.0140 | 58.0 | 6.82% | 2154.0 | 4.62% | motif file (matrix) |
svg |
66 |
| HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer | 1e-2 | -5.980e+00 | 0.0140 | 27.0 | 3.17% | 810.6 | 1.74% | motif file (matrix) |
svg |
67 |
| USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer | 1e-2 | -5.957e+00 | 0.0141 | 28.0 | 3.29% | 852.1 | 1.83% | motif file (matrix) |
svg |
68 |
| Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer | 1e-2 | -5.899e+00 | 0.0147 | 34.0 | 4.00% | 1106.0 | 2.37% | motif file (matrix) |
svg |
69 |
| ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer | 1e-2 | -5.379e+00 | 0.0243 | 67.0 | 7.87% | 2636.2 | 5.66% | motif file (matrix) |
svg |
70 |
| Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer | 1e-2 | -5.372e+00 | 0.0243 | 12.0 | 1.41% | 269.3 | 0.58% | motif file (matrix) |
svg |
71 |
| CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer | 1e-2 | -5.289e+00 | 0.0259 | 30.0 | 3.53% | 980.0 | 2.10% | motif file (matrix) |
svg |
72 |
| GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-2 | -5.208e+00 | 0.0277 | 51.0 | 5.99% | 1915.1 | 4.11% | motif file (matrix) |
svg |
73 |
| Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer | 1e-2 | -5.060e+00 | 0.0316 | 35.0 | 4.11% | 1213.9 | 2.61% | motif file (matrix) |
svg |
74 |
| Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer | 1e-2 | -4.931e+00 | 0.0355 | 32.0 | 3.76% | 1093.4 | 2.35% | motif file (matrix) |
svg |
75 |
| NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer | 1e-2 | -4.864e+00 | 0.0375 | 63.0 | 7.40% | 2511.2 | 5.39% | motif file (matrix) |
svg |
76 |
| bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer | 1e-2 | -4.726e+00 | 0.0424 | 21.0 | 2.47% | 643.1 | 1.38% | motif file (matrix) |
svg |