Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 851)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 46685)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-35	-8.282e+01	0.0000	52.0	6.11%	252.1	0.54%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-33	-7.676e+01	0.0000	146.0	17.16%	2551.8	5.48%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-29	-6.743e+01	0.0000	161.0	18.92%	3291.2	7.06%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-24	-5.704e+01	0.0000	142.0	16.69%	2963.4	6.36%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-21	-4.963e+01	0.0000	56.0	6.58%	608.1	1.31%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-20	-4.726e+01	0.0000	86.0	10.11%	1438.5	3.09%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-18	-4.248e+01	0.0000	77.0	9.05%	1284.9	2.76%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-18	-4.245e+01	0.0000	59.0	6.93%	789.3	1.69%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-18	-4.148e+01	0.0000	88.0	10.34%	1644.9	3.53%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-16	-3.756e+01	0.0000	75.0	8.81%	1344.7	2.89%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-12	-2.901e+01	0.0000	56.0	6.58%	985.2	2.11%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-11	-2.735e+01	0.0000	149.0	17.51%	4507.8	9.67%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-10	-2.440e+01	0.0000	79.0	9.28%	1902.6	4.08%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-10	-2.433e+01	0.0000	60.0	7.05%	1244.0	2.67%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-9	-2.282e+01	0.0000	29.0	3.41%	367.2	0.79%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-9	-2.217e+01	0.0000	21.0	2.47%	196.9	0.42%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-9	-2.208e+01	0.0000	21.0	2.47%	197.6	0.42%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-7	-1.778e+01	0.0000	17.0	2.00%	164.3	0.35%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-7	-1.735e+01	0.0000	48.0	5.64%	1076.0	2.31%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-7	-1.709e+01	0.0000	148.0	17.39%	5190.4	11.14%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-7	-1.661e+01	0.0000	57.0	6.70%	1427.0	3.06%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-7	-1.634e+01	0.0000	27.0	3.17%	437.7	0.94%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-6	-1.597e+01	0.0000	19.0	2.23%	233.6	0.50%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e-6	-1.584e+01	0.0000	56.0	6.58%	1424.7	3.06%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-6	-1.466e+01	0.0000	14.0	1.65%	138.4	0.30%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-6	-1.449e+01	0.0000	43.0	5.05%	1009.1	2.17%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-6	-1.421e+01	0.0000	39.0	4.58%	880.2	1.89%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-6	-1.401e+01	0.0000	57.0	6.70%	1549.7	3.33%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-5	-1.353e+01	0.0000	185.0	21.74%	7259.3	15.58%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-5	-1.312e+01	0.0000	15.0	1.76%	181.4	0.39%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-5	-1.297e+01	0.0000	53.0	6.23%	1448.1	3.11%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-5	-1.280e+01	0.0000	45.0	5.29%	1153.4	2.48%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-5	-1.247e+01	0.0000	63.0	7.40%	1871.8	4.02%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-5	-1.209e+01	0.0001	21.0	2.47%	362.7	0.78%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-5	-1.203e+01	0.0001	36.0	4.23%	858.5	1.84%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-5	-1.203e+01	0.0001	96.0	11.28%	3301.2	7.08%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-5	-1.154e+01	0.0001	26.0	3.06%	533.6	1.15%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-4	-1.145e+01	0.0001	27.0	3.17%	569.5	1.22%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-4	-1.136e+01	0.0001	13.0	1.53%	160.9	0.35%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-4	-9.764e+00	0.0005	98.0	11.52%	3594.9	7.72%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-4	-9.693e+00	0.0005	8.0	0.94%	71.4	0.15%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-4	-9.455e+00	0.0007	108.0	12.69%	4084.4	8.77%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-4	-9.381e+00	0.0007	34.0	4.00%	901.1	1.93%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-3	-9.113e+00	0.0009	40.0	4.70%	1147.6	2.46%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-3	-8.293e+00	0.0020	28.0	3.29%	727.9	1.56%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-3	-8.261e+00	0.0020	31.0	3.64%	842.7	1.81%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-3	-8.177e+00	0.0022	70.0	8.23%	2484.1	5.33%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-3	-8.153e+00	0.0022	44.0	5.17%	1367.6	2.93%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-3	-8.129e+00	0.0022	45.0	5.29%	1411.0	3.03%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-3	-7.866e+00	0.0028	25.0	2.94%	635.1	1.36%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-3	-7.753e+00	0.0031	20.0	2.35%	460.7	0.99%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-3	-7.622e+00	0.0034	25.0	2.94%	646.4	1.39%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-3	-7.588e+00	0.0035	42.0	4.94%	1322.0	2.84%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-3	-7.408e+00	0.0041	76.0	8.93%	2828.1	6.07%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-3	-7.290e+00	0.0045	108.0	12.69%	4335.6	9.30%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-3	-7.199e+00	0.0049	11.0	1.29%	185.0	0.40%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-3	-7.081e+00	0.0054	5.0	0.59%	39.2	0.08%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-3	-7.020e+00	0.0056	43.0	5.05%	1404.3	3.01%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-3	-6.924e+00	0.0061	131.0	15.39%	5494.8	11.79%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-2	-6.685e+00	0.0076	87.0	10.22%	3417.6	7.33%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-2	-6.653e+00	0.0077	169.0	19.86%	7417.5	15.92%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-2	-6.116e+00	0.0130	8.0	0.94%	123.8	0.27%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-2	-6.079e+00	0.0132	26.0	3.06%	764.3	1.64%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-2	-6.023e+00	0.0138	58.0	6.82%	2150.5	4.62%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-2	-5.993e+00	0.0140	58.0	6.82%	2154.0	4.62%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-2	-5.980e+00	0.0140	27.0	3.17%	810.6	1.74%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-2	-5.957e+00	0.0141	28.0	3.29%	852.1	1.83%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-2	-5.899e+00	0.0147	34.0	4.00%	1106.0	2.37%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-2	-5.379e+00	0.0243	67.0	7.87%	2636.2	5.66%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-2	-5.372e+00	0.0243	12.0	1.41%	269.3	0.58%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-2	-5.289e+00	0.0259	30.0	3.53%	980.0	2.10%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-2	-5.208e+00	0.0277	51.0	5.99%	1915.1	4.11%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-2	-5.060e+00	0.0316	35.0	4.11%	1213.9	2.61%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-2	-4.931e+00	0.0355	32.0	3.76%	1093.4	2.35%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e-2	-4.864e+00	0.0375	63.0	7.40%	2511.2	5.39%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-2	-4.726e+00	0.0424	21.0	2.47%	643.1	1.38%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-1	-4.185e+00	0.0720	11.0	1.29%	279.1	0.60%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-1	-4.150e+00	0.0735	33.0	3.88%	1205.2	2.59%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-1	-4.021e+00	0.0826	52.0	6.11%	2098.3	4.50%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-1	-3.975e+00	0.0855	88.0	10.34%	3852.6	8.27%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-1	-3.936e+00	0.0877	49.0	5.76%	1967.0	4.22%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-1	-3.837e+00	0.0957	92.0	10.81%	4075.8	8.75%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-1	-3.796e+00	0.0985	12.0	1.41%	335.2	0.72%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-1	-3.795e+00	0.0985	51.0	5.99%	2080.5	4.47%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-1	-3.791e+00	0.0985	16.0	1.88%	496.2	1.06%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-1	-3.779e+00	0.0985	61.0	7.17%	2562.3	5.50%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-1	-3.777e+00	0.0985	27.0	3.17%	971.1	2.08%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-1	-3.737e+00	0.0985	244.0	28.67%	11939.7	25.62%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e-1	-3.665e+00	0.1047	35.0	4.11%	1345.4	2.89%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-1	-3.589e+00	0.1117	9.0	1.06%	230.1	0.49%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-1	-3.574e+00	0.1122	29.0	3.41%	1080.1	2.32%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e-1	-3.572e+00	0.1122	4.0	0.47%	62.1	0.13%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-1	-3.536e+00	0.1140	19.0	2.23%	640.6	1.37%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-1	-3.445e+00	0.1236	17.0	2.00%	561.2	1.20%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-1	-3.433e+00	0.1238	127.0	14.92%	5927.1	12.72%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-1	-3.400e+00	0.1265	39.0	4.58%	1562.6	3.35%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-1	-3.385e+00	0.1271	78.0	9.17%	3461.2	7.43%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-1	-3.381e+00	0.1271	11.0	1.29%	317.0	0.68%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-1	-3.378e+00	0.1271	4.0	0.47%	66.2	0.14%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-1	-3.320e+00	0.1315	65.0	7.64%	2829.0	6.07%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-1	-3.291e+00	0.1341	27.0	3.17%	1017.4	2.18%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-1	-3.260e+00	0.1369	83.0	9.75%	3734.6	8.02%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-1	-3.214e+00	0.1420	11.0	1.29%	326.1	0.70%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-1	-3.187e+00	0.1445	30.0	3.53%	1166.3	2.50%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-1	-3.169e+00	0.1458	9.0	1.06%	249.4	0.54%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-1	-3.155e+00	0.1464	19.0	2.23%	670.3	1.44%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-1	-3.145e+00	0.1465	28.0	3.29%	1078.0	2.31%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-1	-3.092e+00	0.1531	14.0	1.65%	458.5	0.98%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-1	-3.084e+00	0.1531	34.0	4.00%	1365.7	2.93%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-1	-3.074e+00	0.1531	15.0	1.76%	502.3	1.08%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-1	-3.054e+00	0.1546	20.0	2.35%	723.3	1.55%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-1	-3.032e+00	0.1567	18.0	2.12%	636.9	1.37%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-1	-3.002e+00	0.1601	24.0	2.82%	909.1	1.95%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-1	-2.968e+00	0.1642	61.0	7.17%	2692.5	5.78%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-1	-2.955e+00	0.1649	11.0	1.29%	342.0	0.73%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-1	-2.941e+00	0.1658	42.0	4.94%	1766.4	3.79%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-1	-2.917e+00	0.1683	32.0	3.76%	1291.6	2.77%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-1	-2.916e+00	0.1683	37.0	4.35%	1529.4	3.28%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-1	-2.913e+00	0.1683	128.0	15.04%	6106.7	13.11%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-1	-2.858e+00	0.1741	16.0	1.88%	562.8	1.21%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-1	-2.846e+00	0.1748	24.0	2.82%	925.7	1.99%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-1	-2.836e+00	0.1750	8.0	0.94%	226.2	0.49%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-1	-2.794e+00	0.1810	33.0	3.88%	1355.0	2.91%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-1	-2.777e+00	0.1827	23.0	2.70%	886.4	1.90%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-1	-2.767e+00	0.1829	21.0	2.47%	795.7	1.71%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-1	-2.766e+00	0.1829	49.0	5.76%	2134.9	4.58%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-1	-2.656e+00	0.2012	9.0	1.06%	276.0	0.59%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-1	-2.640e+00	0.2029	5.0	0.59%	120.7	0.26%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-1	-2.629e+00	0.2036	21.0	2.47%	809.8	1.74%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-1	-2.583e+00	0.2115	12.0	1.41%	408.9	0.88%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-1	-2.562e+00	0.2144	16.0	1.88%	587.5	1.26%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-1	-2.530e+00	0.2196	4.0	0.47%	88.8	0.19%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-1	-2.525e+00	0.2196	135.0	15.86%	6577.4	14.12%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-1	-2.498e+00	0.2234	19.0	2.23%	730.6	1.57%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-1	-2.447e+00	0.2333	15.0	1.76%	552.6	1.19%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-1	-2.432e+00	0.2352	3.0	0.35%	57.4	0.12%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-1	-2.326e+00	0.2596	33.0	3.88%	1419.5	3.05%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-2.187e+00	0.2961	31.0	3.64%	1342.9	2.88%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-2.140e+00	0.3080	3.0	0.35%	65.7	0.14%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-2.123e+00	0.3110	6.0	0.71%	182.3	0.39%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-2.105e+00	0.3147	4.0	0.47%	103.9	0.22%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-2.098e+00	0.3147	2.0	0.24%	33.1	0.07%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-2.082e+00	0.3172	57.0	6.70%	2664.3	5.72%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-2.075e+00	0.3173	26.0	3.06%	1114.2	2.39%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-2.069e+00	0.3173	15.0	1.76%	588.6	1.26%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-2.047e+00	0.3221	5.0	0.59%	145.2	0.31%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-2.043e+00	0.3221	3.0	0.35%	69.0	0.15%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-2.030e+00	0.3229	8.0	0.94%	273.3	0.59%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-1.987e+00	0.3349	32.0	3.76%	1423.3	3.05%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-1.967e+00	0.3394	37.0	4.35%	1676.4	3.60%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-1.965e+00	0.3394	25.0	2.94%	1081.7	2.32%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.943e+00	0.3431	70.0	8.23%	3364.3	7.22%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.935e+00	0.3435	21.0	2.47%	890.4	1.91%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-1.882e+00	0.3599	30.0	3.53%	1341.5	2.88%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-1.882e+00	0.3599	103.0	12.10%	5100.6	10.95%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.879e+00	0.3599	6.0	0.71%	196.6	0.42%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.836e+00	0.3697	70.0	8.23%	3392.1	7.28%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-1.835e+00	0.3697	29.0	3.41%	1300.0	2.79%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.815e+00	0.3729	7.0	0.82%	244.4	0.52%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-1.801e+00	0.3756	97.0	11.40%	4811.7	10.33%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.784e+00	0.3773	3.0	0.35%	77.5	0.17%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.784e+00	0.3773	3.0	0.35%	77.5	0.17%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.769e+00	0.3806	9.0	1.06%	338.1	0.73%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-1.758e+00	0.3825	3.0	0.35%	78.1	0.17%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-1.748e+00	0.3841	71.0	8.34%	3468.3	7.44%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.738e+00	0.3841	6.0	0.71%	205.3	0.44%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-1.738e+00	0.3841	6.0	0.71%	205.3	0.44%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-1.733e+00	0.3841	81.0	9.52%	3994.9	8.57%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-1.708e+00	0.3905	11.0	1.29%	437.2	0.94%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-1.702e+00	0.3905	4.0	0.47%	121.5	0.26%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-1.680e+00	0.3965	18.0	2.12%	778.6	1.67%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.675e+00	0.3965	8.0	0.94%	300.6	0.65%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-1.675e+00	0.3965	24.0	2.82%	1076.6	2.31%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-1.666e+00	0.3965	14.0	1.65%	585.9	1.26%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.664e+00	0.3965	6.0	0.71%	210.9	0.45%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.663e+00	0.3965	8.0	0.94%	301.3	0.65%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.662e+00	0.3965	57.0	6.70%	2764.1	5.93%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.655e+00	0.3965	13.0	1.53%	538.0	1.15%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-1.636e+00	0.3965	55.0	6.46%	2667.6	5.73%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e0	-1.628e+00	0.3971	12.0	1.41%	494.0	1.06%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-1.625e+00	0.3971	1.0	0.12%	12.5	0.03%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-1.625e+00	0.3971	4.0	0.47%	125.1	0.27%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.614e+00	0.3971	2.0	0.24%	45.2	0.10%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-1.608e+00	0.3971	27.0	3.17%	1238.6	2.66%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-1.588e+00	0.4020	3.0	0.35%	85.2	0.18%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-1.581e+00	0.4025	2.0	0.24%	46.7	0.10%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.565e+00	0.4072	7.0	0.82%	263.2	0.56%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-1.553e+00	0.4097	6.0	0.71%	218.3	0.47%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-1.518e+00	0.4221	59.0	6.93%	2907.2	6.24%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-1.499e+00	0.4281	27.0	3.17%	1258.5	2.70%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-1.477e+00	0.4352	23.0	2.70%	1060.0	2.27%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-1.446e+00	0.4464	27.0	3.17%	1268.2	2.72%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-1.435e+00	0.4489	33.0	3.88%	1579.0	3.39%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.429e+00	0.4493	148.0	17.39%	7660.9	16.44%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-1.419e+00	0.4517	48.0	5.64%	2360.4	5.07%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-1.376e+00	0.4692	58.0	6.82%	2896.6	6.22%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-1.373e+00	0.4692	1.0	0.12%	16.1	0.03%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-1.362e+00	0.4708	140.0	16.45%	7263.0	15.59%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-1.346e+00	0.4761	58.0	6.82%	2905.3	6.24%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.330e+00	0.4813	41.0	4.82%	2018.7	4.33%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-1.329e+00	0.4813	49.0	5.76%	2437.3	5.23%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-1.318e+00	0.4826	6.0	0.71%	237.0	0.51%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-1.307e+00	0.4853	12.0	1.41%	532.3	1.14%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-1.300e+00	0.4864	2.0	0.24%	56.8	0.12%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.282e+00	0.4927	23.0	2.70%	1095.9	2.35%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.251e+00	0.5058	3.0	0.35%	102.6	0.22%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.248e+00	0.5058	19.0	2.23%	896.3	1.92%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.237e+00	0.5078	8.0	0.94%	342.5	0.74%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-1.228e+00	0.5099	2.0	0.24%	60.0	0.13%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.222e+00	0.5106	4.0	0.47%	150.6	0.32%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-1.204e+00	0.5173	47.0	5.52%	2368.6	5.08%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.187e+00	0.5237	6.0	0.71%	249.5	0.54%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-1.178e+00	0.5262	59.0	6.93%	3012.4	6.47%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-1.171e+00	0.5276	53.0	6.23%	2696.0	5.79%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-1.151e+00	0.5353	7.0	0.82%	302.3	0.65%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-1.125e+00	0.5469	20.0	2.35%	971.9	2.09%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-1.119e+00	0.5480	12.0	1.41%	559.2	1.20%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.106e+00	0.5526	1.0	0.12%	22.5	0.05%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-1.098e+00	0.5546	11.0	1.29%	511.3	1.10%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.070e+00	0.5650	1.0	0.12%	23.7	0.05%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-1.070e+00	0.5650	1.0	0.12%	23.1	0.05%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-1.069e+00	0.5650	33.0	3.88%	1667.5	3.58%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.045e+00	0.5741	4.0	0.47%	164.7	0.35%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.032e+00	0.5790	9.0	1.06%	418.6	0.90%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-9.940e-01	0.5988	46.0	5.41%	2382.3	5.11%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-9.714e-01	0.6097	2.0	0.24%	72.2	0.15%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-9.534e-01	0.6180	5.0	0.59%	223.9	0.48%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-9.453e-01	0.6203	19.0	2.23%	957.8	2.06%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-9.337e-01	0.6248	43.0	5.05%	2242.3	4.81%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-9.222e-01	0.6293	6.0	0.71%	278.4	0.60%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-9.042e-01	0.6379	4.0	0.47%	177.5	0.38%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-8.943e-01	0.6416	4.0	0.47%	178.4	0.38%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-8.701e-01	0.6544	3.0	0.35%	129.2	0.28%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-8.637e-01	0.6558	7.0	0.82%	338.0	0.73%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-8.574e-01	0.6571	33.0	3.88%	1730.5	3.71%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-8.523e-01	0.6577	19.0	2.23%	979.4	2.10%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-8.476e-01	0.6580	27.0	3.17%	1410.4	3.03%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-8.242e-01	0.6707	27.0	3.17%	1417.6	3.04%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-8.031e-01	0.6822	7.0	0.82%	347.1	0.74%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-7.950e-01	0.6849	27.0	3.17%	1426.3	3.06%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-7.919e-01	0.6849	12.0	1.41%	617.6	1.33%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-7.904e-01	0.6849	14.0	1.65%	725.3	1.56%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-7.785e-01	0.6877	55.0	6.46%	2952.5	6.34%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-7.666e-01	0.6931	27.0	3.17%	1435.5	3.08%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-7.515e-01	0.7008	2.0	0.24%	87.6	0.19%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-7.484e-01	0.7008	39.0	4.58%	2094.7	4.50%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-7.378e-01	0.7047	10.0	1.18%	520.3	1.12%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-6.999e-01	0.7289	54.0	6.35%	2934.0	6.30%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-6.964e-01	0.7289	3.0	0.35%	146.5	0.31%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-6.959e-01	0.7289	12.0	1.41%	638.8	1.37%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-6.853e-01	0.7308	4.0	0.47%	202.3	0.43%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-6.840e-01	0.7308	5.0	0.59%	257.4	0.55%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-6.769e-01	0.7312	70.0	8.23%	3822.4	8.20%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-6.662e-01	0.7361	12.0	1.41%	645.6	1.39%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-6.472e-01	0.7473	27.0	3.17%	1476.7	3.17%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-6.423e-01	0.7480	9.0	1.06%	485.1	1.04%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-6.398e-01	0.7480	20.0	2.35%	1093.1	2.35%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-6.381e-01	0.7480	50.0	5.88%	2745.4	5.89%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-6.370e-01	0.7480	2.0	0.24%	97.5	0.21%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-6.340e-01	0.7480	46.0	5.41%	2527.1	5.42%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-6.119e-01	0.7564	40.0	4.70%	2207.5	4.74%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-5.933e-01	0.7676	4.0	0.47%	215.3	0.46%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-5.907e-01	0.7676	53.0	6.23%	2935.8	6.30%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-5.901e-01	0.7676	21.0	2.47%	1165.5	2.50%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-5.839e-01	0.7676	16.0	1.88%	889.5	1.91%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-5.801e-01	0.7676	10.0	1.18%	555.7	1.19%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-5.788e-01	0.7676	1.0	0.12%	45.6	0.10%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-5.761e-01	0.7676	12.0	1.41%	668.5	1.43%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-5.660e-01	0.7683	23.0	2.70%	1285.5	2.76%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-5.573e-01	0.7722	11.0	1.29%	617.4	1.32%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-5.531e-01	0.7725	129.0	15.16%	7151.7	15.35%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-5.491e-01	0.7728	15.0	1.76%	844.9	1.81%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-5.422e-01	0.7753	50.0	5.88%	2796.9	6.00%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-5.325e-01	0.7800	67.0	7.87%	3744.8	8.04%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-5.254e-01	0.7827	99.0	11.63%	5519.3	11.85%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-5.228e-01	0.7827	9.0	1.06%	513.9	1.10%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-5.213e-01	0.7827	15.0	1.76%	853.8	1.83%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-5.200e-01	0.7827	14.0	1.65%	797.1	1.71%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-5.151e-01	0.7827	95.0	11.16%	5306.0	11.39%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-5.134e-01	0.7827	4.0	0.47%	228.1	0.49%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-5.119e-01	0.7827	6.0	0.71%	344.3	0.74%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-5.074e-01	0.7827	9.0	1.06%	517.1	1.11%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-5.062e-01	0.7827	17.0	2.00%	971.5	2.08%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-5.044e-01	0.7827	47.0	5.52%	2651.8	5.69%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-5.038e-01	0.7827	3.0	0.35%	171.8	0.37%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-5.005e-01	0.7827	1.0	0.12%	51.3	0.11%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-4.630e-01	0.7983	6.0	0.71%	355.8	0.76%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-4.618e-01	0.7983	2.0	0.24%	117.9	0.25%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-4.613e-01	0.7983	91.0	10.69%	5128.0	11.01%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-4.603e-01	0.7983	3.0	0.35%	178.9	0.38%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-4.422e-01	0.8038	6.0	0.71%	360.3	0.77%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-4.315e-01	0.8097	3.0	0.35%	183.2	0.39%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-4.304e-01	0.8097	10.0	1.18%	597.8	1.28%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-4.244e-01	0.8099	5.0	0.59%	305.3	0.66%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-4.225e-01	0.8099	7.0	0.82%	424.4	0.91%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-3.922e-01	0.8308	53.0	6.23%	3061.4	6.57%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-3.786e-01	0.8393	69.0	8.11%	3971.8	8.52%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-3.683e-01	0.8451	69.0	8.11%	3980.5	8.54%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-3.548e-01	0.8537	62.0	7.29%	3599.0	7.72%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-2.935e-01	0.9048	9.0	1.06%	588.3	1.26%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-2.912e-01	0.9048	25.0	2.94%	1536.3	3.30%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-2.762e-01	0.9144	5.0	0.59%	347.3	0.75%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-2.545e-01	0.9313	12.0	1.41%	789.2	1.69%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-2.508e-01	0.9318	3.0	0.35%	225.9	0.48%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-2.476e-01	0.9318	1.0	0.12%	83.0	0.18%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-2.438e-01	0.9321	12.0	1.41%	795.5	1.71%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-2.219e-01	0.9497	4.0	0.47%	302.8	0.65%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-2.189e-01	0.9497	2.0	0.24%	165.3	0.35%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-2.159e-01	0.9497	71.0	8.34%	4259.1	9.14%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-2.156e-01	0.9497	2.0	0.24%	166.6	0.36%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-2.144e-01	0.9497	1.0	0.12%	90.6	0.19%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-2.062e-01	0.9497	35.0	4.11%	2192.5	4.71%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-2.059e-01	0.9497	22.0	2.59%	1424.7	3.06%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-1.945e-01	0.9544	8.0	0.94%	575.1	1.23%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-1.901e-01	0.9555	52.0	6.11%	3201.9	6.87%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-1.821e-01	0.9602	4.0	0.47%	319.2	0.69%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-1.808e-01	0.9602	13.0	1.53%	898.2	1.93%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-1.765e-01	0.9602	2.0	0.24%	179.3	0.38%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.756e-01	0.9602	13.0	1.53%	902.5	1.94%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.715e-01	0.9602	17.0	2.00%	1152.6	2.47%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.610e-01	0.9653	2.0	0.24%	185.9	0.40%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.605e-01	0.9653	68.0	7.99%	4172.0	8.95%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.446e-01	0.9752	2.0	0.24%	192.1	0.41%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-1.350e-01	0.9816	30.0	3.53%	1981.9	4.25%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.317e-01	0.9818	13.0	1.53%	941.4	2.02%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.251e-01	0.9853	9.0	1.06%	690.3	1.48%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-1.219e-01	0.9854	22.0	2.59%	1513.6	3.25%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.174e-01	0.9868	4.0	0.47%	356.0	0.76%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.124e-01	0.9887	3.0	0.35%	286.8	0.62%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.105e-01	0.9887	6.0	0.71%	502.9	1.08%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-1.072e-01	0.9887	1.0	0.12%	125.3	0.27%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-1.044e-01	0.9887	23.0	2.70%	1600.9	3.44%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.017e-01	0.9887	49.0	5.76%	3173.6	6.81%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.017e-01	0.9887	24.0	2.82%	1666.6	3.58%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-9.698e-02	0.9887	2.0	0.24%	219.0	0.47%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-8.291e-02	0.9971	124.0	14.57%	7586.6	16.28%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-7.244e-02	1.0000	35.0	4.11%	2400.3	5.15%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-5.822e-02	1.0000	52.0	6.11%	3472.7	7.45%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-5.715e-02	1.0000	1.0	0.12%	158.2	0.34%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-4.929e-02	1.0000	7.0	0.82%	650.5	1.40%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-4.543e-02	1.0000	9.0	1.06%	800.1	1.72%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-4.208e-02	1.0000	7.0	0.82%	665.9	1.43%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-3.824e-02	1.0000	2.0	0.24%	278.7	0.60%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-3.759e-02	1.0000	54.0	6.35%	3682.2	7.90%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-3.456e-02	1.0000	5.0	0.59%	533.9	1.15%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-2.704e-02	1.0000	1.0	0.12%	198.3	0.43%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-2.314e-02	1.0000	9.0	1.06%	868.7	1.86%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-1.626e-02	1.0000	4.0	0.47%	512.2	1.10%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-1.211e-02	1.0000	14.0	1.65%	1293.8	2.78%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-1.014e-02	1.0000	44.0	5.17%	3298.0	7.08%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-8.127e-03	1.0000	3.0	0.35%	474.0	1.02%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-8.030e-03	1.0000	5.0	0.59%	650.3	1.40%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-2.211e-03	1.0000	41.0	4.82%	3330.6	7.15%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-1.000e-05	1.0000	69.0	8.11%	5895.4	12.65%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	0.000e+00	1.0000	0.0	0.00%	23.3	0.05%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	35.2	0.08%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	48.6	0.10%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	0.000e+00	1.0000	0.0	0.00%	15.8	0.03%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	0.000e+00	1.0000	0.0	0.00%	94.3	0.20%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	36.1	0.08%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	15.3	0.03%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	5.6	0.01%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	0.000e+00	1.0000	0.0	0.00%	26.0	0.06%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	3.4	0.01%