Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
1 |
| Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer | 1e-200 | -4.627e+02 | 0.0000 | 307.0 | 45.28% | 2405.3 | 5.22% | motif file (matrix) |
svg |
2 |
| GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer | 1e-183 | -4.215e+02 | 0.0000 | 338.0 | 49.85% | 3613.9 | 7.85% | motif file (matrix) |
svg |
3 |
| CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer | 1e-169 | -3.908e+02 | 0.0000 | 435.0 | 64.16% | 7556.6 | 16.41% | motif file (matrix) |
svg |
4 |
| Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer | 1e-109 | -2.527e+02 | 0.0000 | 485.0 | 71.53% | 13760.7 | 29.88% | motif file (matrix) |
svg |
5 |
| OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-34 | -7.888e+01 | 0.0000 | 50.0 | 7.37% | 308.6 | 0.67% | motif file (matrix) |
svg |
6 |
| Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer | 1e-28 | -6.547e+01 | 0.0000 | 150.0 | 22.12% | 3758.6 | 8.16% | motif file (matrix) |
svg |
7 |
| Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer | 1e-21 | -4.992e+01 | 0.0000 | 130.0 | 19.17% | 3495.5 | 7.59% | motif file (matrix) |
svg |
8 |
| Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer | 1e-21 | -4.854e+01 | 0.0000 | 84.0 | 12.39% | 1692.9 | 3.68% | motif file (matrix) |
svg |
9 |
| Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer | 1e-19 | -4.481e+01 | 0.0000 | 68.0 | 10.03% | 1228.3 | 2.67% | motif file (matrix) |
svg |
10 |
| Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-18 | -4.217e+01 | 0.0000 | 56.0 | 8.26% | 897.1 | 1.95% | motif file (matrix) |
svg |
11 |
| Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer | 1e-17 | -4.012e+01 | 0.0000 | 75.0 | 11.06% | 1602.2 | 3.48% | motif file (matrix) |
svg |
12 |
| Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer | 1e-16 | -3.756e+01 | 0.0000 | 97.0 | 14.31% | 2575.8 | 5.59% | motif file (matrix) |
svg |
13 |
| Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer | 1e-15 | -3.638e+01 | 0.0000 | 66.0 | 9.73% | 1379.0 | 2.99% | motif file (matrix) |
svg |
14 |
| Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer | 1e-15 | -3.633e+01 | 0.0000 | 71.0 | 10.47% | 1567.1 | 3.40% | motif file (matrix) |
svg |
15 |
| Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-15 | -3.632e+01 | 0.0000 | 62.0 | 9.14% | 1236.7 | 2.69% | motif file (matrix) |
svg |
16 |
| Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer | 1e-15 | -3.593e+01 | 0.0000 | 113.0 | 16.67% | 3356.3 | 7.29% | motif file (matrix) |
svg |
17 |
| Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer | 1e-15 | -3.563e+01 | 0.0000 | 66.0 | 9.73% | 1402.0 | 3.04% | motif file (matrix) |
svg |
18 |
| GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-14 | -3.441e+01 | 0.0000 | 122.0 | 17.99% | 3853.7 | 8.37% | motif file (matrix) |
svg |
19 |
| Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer | 1e-14 | -3.441e+01 | 0.0000 | 83.0 | 12.24% | 2111.6 | 4.58% | motif file (matrix) |
svg |
20 |
| TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer | 1e-13 | -3.132e+01 | 0.0000 | 75.0 | 11.06% | 1899.9 | 4.13% | motif file (matrix) |
svg |
21 |
| Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer | 1e-13 | -3.071e+01 | 0.0000 | 69.0 | 10.18% | 1678.6 | 3.64% | motif file (matrix) |
svg |
22 |
| TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer | 1e-11 | -2.733e+01 | 0.0000 | 51.0 | 7.52% | 1094.1 | 2.38% | motif file (matrix) |
svg |
23 |
| Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer | 1e-11 | -2.599e+01 | 0.0000 | 78.0 | 11.50% | 2254.6 | 4.90% | motif file (matrix) |
svg |
24 |
| CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-10 | -2.516e+01 | 0.0000 | 18.0 | 2.65% | 143.0 | 0.31% | motif file (matrix) |
svg |
25 |
| TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer | 1e-9 | -2.206e+01 | 0.0000 | 58.0 | 8.55% | 1562.4 | 3.39% | motif file (matrix) |
svg |
26 |
| Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer | 1e-9 | -2.200e+01 | 0.0000 | 54.0 | 7.96% | 1397.2 | 3.03% | motif file (matrix) |
svg |
27 |
| Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer | 1e-9 | -2.145e+01 | 0.0000 | 63.0 | 9.29% | 1805.6 | 3.92% | motif file (matrix) |
svg |
28 |
| Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer | 1e-9 | -2.089e+01 | 0.0000 | 38.0 | 5.60% | 809.3 | 1.76% | motif file (matrix) |
svg |
29 |
| Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer | 1e-8 | -2.014e+01 | 0.0000 | 32.0 | 4.72% | 616.5 | 1.34% | motif file (matrix) |
svg |
30 |
| Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer | 1e-8 | -1.876e+01 | 0.0000 | 55.0 | 8.11% | 1580.2 | 3.43% | motif file (matrix) |
svg |
31 |
| FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer | 1e-7 | -1.742e+01 | 0.0000 | 59.0 | 8.70% | 1827.9 | 3.97% | motif file (matrix) |
svg |
32 |
| Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer | 1e-7 | -1.731e+01 | 0.0000 | 126.0 | 18.58% | 5252.4 | 11.40% | motif file (matrix) |
svg |
33 |
| FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer | 1e-7 | -1.691e+01 | 0.0000 | 61.0 | 9.00% | 1947.6 | 4.23% | motif file (matrix) |
svg |
34 |
| FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer | 1e-7 | -1.647e+01 | 0.0000 | 68.0 | 10.03% | 2307.0 | 5.01% | motif file (matrix) |
svg |
35 |
| Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer | 1e-7 | -1.638e+01 | 0.0000 | 54.0 | 7.96% | 1654.0 | 3.59% | motif file (matrix) |
svg |
36 |
| Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer | 1e-5 | -1.307e+01 | 0.0000 | 23.0 | 3.39% | 494.2 | 1.07% | motif file (matrix) |
svg |
37 |
| Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer | 1e-4 | -1.116e+01 | 0.0001 | 22.0 | 3.24% | 518.1 | 1.12% | motif file (matrix) |
svg |
38 |
| EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer | 1e-4 | -1.067e+01 | 0.0002 | 65.0 | 9.59% | 2579.6 | 5.60% | motif file (matrix) |
svg |
39 |
| BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-4 | -1.065e+01 | 0.0002 | 15.0 | 2.21% | 278.8 | 0.61% | motif file (matrix) |
svg |
40 |
| AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer | 1e-4 | -1.062e+01 | 0.0002 | 64.0 | 9.44% | 2531.9 | 5.50% | motif file (matrix) |
svg |
41 |
| Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer | 1e-4 | -9.997e+00 | 0.0004 | 30.0 | 4.42% | 904.0 | 1.96% | motif file (matrix) |
svg |
42 |
| Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer | 1e-4 | -9.537e+00 | 0.0006 | 76.0 | 11.21% | 3278.1 | 7.12% | motif file (matrix) |
svg |
43 |
| Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-4 | -9.475e+00 | 0.0006 | 15.0 | 2.21% | 309.9 | 0.67% | motif file (matrix) |
svg |
44 |
| FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer | 1e-3 | -8.995e+00 | 0.0010 | 27.0 | 3.98% | 820.3 | 1.78% | motif file (matrix) |
svg |
45 |
| Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer | 1e-3 | -8.522e+00 | 0.0016 | 31.0 | 4.57% | 1032.0 | 2.24% | motif file (matrix) |
svg |
46 |
| Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer | 1e-3 | -8.285e+00 | 0.0020 | 40.0 | 5.90% | 1487.7 | 3.23% | motif file (matrix) |
svg |
47 |
| TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer | 1e-3 | -7.524e+00 | 0.0042 | 8.0 | 1.18% | 122.8 | 0.27% | motif file (matrix) |
svg |
48 |
| GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer | 1e-3 | -7.440e+00 | 0.0045 | 11.0 | 1.62% | 224.0 | 0.49% | motif file (matrix) |
svg |
49 |
| Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer | 1e-3 | -7.343e+00 | 0.0048 | 49.0 | 7.23% | 2035.6 | 4.42% | motif file (matrix) |
svg |
50 |
| FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer | 1e-3 | -7.336e+00 | 0.0048 | 41.0 | 6.05% | 1614.8 | 3.51% | motif file (matrix) |
svg |
51 |
| PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer | 1e-3 | -7.244e+00 | 0.0051 | 22.0 | 3.24% | 686.1 | 1.49% | motif file (matrix) |
svg |
52 |
| HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer | 1e-3 | -7.202e+00 | 0.0052 | 43.0 | 6.34% | 1730.4 | 3.76% | motif file (matrix) |
svg |
53 |
| GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer | 1e-3 | -7.185e+00 | 0.0052 | 45.0 | 6.64% | 1837.5 | 3.99% | motif file (matrix) |
svg |
54 |
| Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer | 1e-2 | -6.761e+00 | 0.0078 | 34.0 | 5.01% | 1301.4 | 2.83% | motif file (matrix) |
svg |
55 |
| Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer | 1e-2 | -6.563e+00 | 0.0093 | 55.0 | 8.11% | 2443.6 | 5.31% | motif file (matrix) |
svg |
56 |
| Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer | 1e-2 | -6.521e+00 | 0.0096 | 16.0 | 2.36% | 455.3 | 0.99% | motif file (matrix) |
svg |
57 |
| Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-2 | -5.893e+00 | 0.0176 | 211.0 | 31.12% | 12105.3 | 26.28% | motif file (matrix) |
svg |
58 |
| Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer | 1e-2 | -5.808e+00 | 0.0189 | 114.0 | 16.81% | 6020.1 | 13.07% | motif file (matrix) |
svg |
59 |
| EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer | 1e-2 | -5.760e+00 | 0.0194 | 16.0 | 2.36% | 492.6 | 1.07% | motif file (matrix) |
svg |
60 |
| ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer | 1e-2 | -5.570e+00 | 0.0231 | 50.0 | 7.37% | 2280.6 | 4.95% | motif file (matrix) |
svg |
61 |
| ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer | 1e-2 | -5.474e+00 | 0.0250 | 26.0 | 3.83% | 995.0 | 2.16% | motif file (matrix) |
svg |
62 |
| Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer | 1e-2 | -5.204e+00 | 0.0323 | 40.0 | 5.90% | 1766.7 | 3.84% | motif file (matrix) |
svg |
63 |
| GFY-Staf(?,Zf)/Promoter/Homer | 1e-2 | -5.154e+00 | 0.0334 | 5.0 | 0.74% | 76.1 | 0.17% | motif file (matrix) |
svg |
64 |
| FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer | 1e-2 | -5.021e+00 | 0.0375 | 46.0 | 6.78% | 2122.3 | 4.61% | motif file (matrix) |
svg |
65 |
| RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer | 1e-2 | -4.899e+00 | 0.0417 | 6.0 | 0.88% | 114.4 | 0.25% | motif file (matrix) |
svg |
66 |
| SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer | 1e-2 | -4.775e+00 | 0.0465 | 47.0 | 6.93% | 2210.1 | 4.80% | motif file (matrix) |
svg |
67 |
| Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer | 1e-2 | -4.717e+00 | 0.0486 | 23.0 | 3.39% | 902.3 | 1.96% | motif file (matrix) |
svg |
68 |
| Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer | 1e-2 | -4.668e+00 | 0.0503 | 27.0 | 3.98% | 1116.7 | 2.42% | motif file (matrix) |
svg |
69 |
| Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer | 1e-2 | -4.661e+00 | 0.0503 | 128.0 | 18.88% | 7126.9 | 15.47% | motif file (matrix) |
svg |
70 |
| Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer | 1e-2 | -4.644e+00 | 0.0503 | 98.0 | 14.45% | 5268.1 | 11.44% | motif file (matrix) |
svg |
71 |
| Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer | 1e-2 | -4.606e+00 | 0.0512 | 4.0 | 0.59% | 56.2 | 0.12% | motif file (matrix) |
svg |