Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
1 |
| CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer | 1e-99 | -2.303e+02 | 0.0000 | 366.0 | 46.56% | 6929.6 | 14.63% | motif file (matrix) |
svg |
2 |
| Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer | 1e-97 | -2.255e+02 | 0.0000 | 212.0 | 26.97% | 2171.8 | 4.59% | motif file (matrix) |
svg |
3 |
| GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer | 1e-90 | -2.084e+02 | 0.0000 | 243.0 | 30.92% | 3225.8 | 6.81% | motif file (matrix) |
svg |
4 |
| Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer | 1e-59 | -1.379e+02 | 0.0000 | 440.0 | 55.98% | 13255.9 | 27.99% | motif file (matrix) |
svg |
5 |
| CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-21 | -5.012e+01 | 0.0000 | 32.0 | 4.07% | 179.5 | 0.38% | motif file (matrix) |
svg |
6 |
| Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer | 1e-16 | -3.836e+01 | 0.0000 | 136.0 | 17.30% | 3789.5 | 8.00% | motif file (matrix) |
svg |
7 |
| Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer | 1e-15 | -3.478e+01 | 0.0000 | 81.0 | 10.31% | 1777.8 | 3.75% | motif file (matrix) |
svg |
8 |
| Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer | 1e-14 | -3.236e+01 | 0.0000 | 120.0 | 15.27% | 3407.5 | 7.20% | motif file (matrix) |
svg |
9 |
| BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-13 | -3.178e+01 | 0.0000 | 30.0 | 3.82% | 299.3 | 0.63% | motif file (matrix) |
svg |
10 |
| OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-12 | -2.993e+01 | 0.0000 | 31.0 | 3.94% | 345.1 | 0.73% | motif file (matrix) |
svg |
11 |
| Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer | 1e-11 | -2.629e+01 | 0.0000 | 113.0 | 14.38% | 3425.5 | 7.23% | motif file (matrix) |
svg |
12 |
| Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer | 1e-10 | -2.524e+01 | 0.0000 | 61.0 | 7.76% | 1376.2 | 2.91% | motif file (matrix) |
svg |
13 |
| Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer | 1e-9 | -2.260e+01 | 0.0000 | 67.0 | 8.52% | 1702.0 | 3.59% | motif file (matrix) |
svg |
14 |
| Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer | 1e-9 | -2.159e+01 | 0.0000 | 67.0 | 8.52% | 1745.3 | 3.69% | motif file (matrix) |
svg |
15 |
| Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer | 1e-9 | -2.157e+01 | 0.0000 | 56.0 | 7.12% | 1324.3 | 2.80% | motif file (matrix) |
svg |
16 |
| Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-9 | -2.130e+01 | 0.0000 | 56.0 | 7.12% | 1334.3 | 2.82% | motif file (matrix) |
svg |
17 |
| Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer | 1e-8 | -2.060e+01 | 0.0000 | 75.0 | 9.54% | 2114.4 | 4.46% | motif file (matrix) |
svg |
18 |
| Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer | 1e-7 | -1.711e+01 | 0.0000 | 29.0 | 3.69% | 525.0 | 1.11% | motif file (matrix) |
svg |
19 |
| Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer | 1e-7 | -1.673e+01 | 0.0000 | 60.0 | 7.63% | 1689.3 | 3.57% | motif file (matrix) |
svg |
20 |
| Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer | 1e-5 | -1.358e+01 | 0.0000 | 25.0 | 3.18% | 489.0 | 1.03% | motif file (matrix) |
svg |
21 |
| Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-5 | -1.326e+01 | 0.0000 | 38.0 | 4.83% | 970.4 | 2.05% | motif file (matrix) |
svg |
22 |
| Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer | 1e-5 | -1.299e+01 | 0.0000 | 29.0 | 3.69% | 645.1 | 1.36% | motif file (matrix) |
svg |
23 |
| TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer | 1e-4 | -1.112e+01 | 0.0002 | 12.0 | 1.53% | 154.7 | 0.33% | motif file (matrix) |
svg |
24 |
| Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer | 1e-4 | -1.079e+01 | 0.0003 | 172.0 | 21.88% | 7680.0 | 16.22% | motif file (matrix) |
svg |
25 |
| Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer | 1e-4 | -9.879e+00 | 0.0007 | 32.0 | 4.07% | 885.6 | 1.87% | motif file (matrix) |
svg |
26 |
| Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer | 1e-4 | -9.707e+00 | 0.0009 | 49.0 | 6.23% | 1622.5 | 3.43% | motif file (matrix) |
svg |
27 |
| JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer | 1e-4 | -9.282e+00 | 0.0013 | 30.0 | 3.82% | 833.3 | 1.76% | motif file (matrix) |
svg |
28 |
| Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer | 1e-3 | -9.198e+00 | 0.0013 | 34.0 | 4.33% | 1002.6 | 2.12% | motif file (matrix) |
svg |
29 |
| BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer | 1e-3 | -8.960e+00 | 0.0016 | 34.0 | 4.33% | 1015.3 | 2.14% | motif file (matrix) |
svg |
30 |
| FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer | 1e-3 | -8.907e+00 | 0.0016 | 54.0 | 6.87% | 1908.3 | 4.03% | motif file (matrix) |
svg |
31 |
| ETS(ETS)/Promoter/Homer | 1e-3 | -8.207e+00 | 0.0032 | 24.0 | 3.05% | 643.2 | 1.36% | motif file (matrix) |
svg |
32 |
| Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer | 1e-3 | -8.031e+00 | 0.0037 | 128.0 | 16.28% | 5727.2 | 12.09% | motif file (matrix) |
svg |
33 |
| Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer | 1e-3 | -7.883e+00 | 0.0042 | 30.0 | 3.82% | 906.2 | 1.91% | motif file (matrix) |
svg |
34 |
| Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer | 1e-3 | -7.571e+00 | 0.0055 | 21.0 | 2.67% | 553.1 | 1.17% | motif file (matrix) |
svg |
35 |
| Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer | 1e-3 | -7.469e+00 | 0.0059 | 29.0 | 3.69% | 887.4 | 1.87% | motif file (matrix) |
svg |
36 |
| Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer | 1e-3 | -7.441e+00 | 0.0059 | 33.0 | 4.20% | 1062.0 | 2.24% | motif file (matrix) |
svg |
37 |
| AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-3 | -7.264e+00 | 0.0069 | 36.0 | 4.58% | 1207.7 | 2.55% | motif file (matrix) |
svg |
38 |
| Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer | 1e-2 | -6.850e+00 | 0.0102 | 22.0 | 2.80% | 627.2 | 1.32% | motif file (matrix) |
svg |
39 |
| TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer | 1e-2 | -6.669e+00 | 0.0118 | 50.0 | 6.36% | 1909.8 | 4.03% | motif file (matrix) |
svg |
40 |
| Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer | 1e-2 | -6.598e+00 | 0.0124 | 72.0 | 9.16% | 3007.3 | 6.35% | motif file (matrix) |
svg |
41 |
| Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer | 1e-2 | -6.402e+00 | 0.0147 | 17.0 | 2.16% | 447.3 | 0.94% | motif file (matrix) |
svg |
42 |
| FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer | 1e-2 | -6.113e+00 | 0.0192 | 58.0 | 7.38% | 2358.3 | 4.98% | motif file (matrix) |
svg |
43 |
| Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer | 1e-2 | -6.109e+00 | 0.0192 | 40.0 | 5.09% | 1481.3 | 3.13% | motif file (matrix) |
svg |
44 |
| ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer | 1e-2 | -5.927e+00 | 0.0221 | 32.0 | 4.07% | 1122.1 | 2.37% | motif file (matrix) |
svg |
45 |
| ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer | 1e-2 | -5.923e+00 | 0.0221 | 58.0 | 7.38% | 2379.3 | 5.02% | motif file (matrix) |
svg |
46 |
| NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer | 1e-2 | -5.864e+00 | 0.0225 | 33.0 | 4.20% | 1173.9 | 2.48% | motif file (matrix) |
svg |
47 |
| Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer | 1e-2 | -5.859e+00 | 0.0225 | 15.0 | 1.91% | 392.3 | 0.83% | motif file (matrix) |
svg |
48 |
| TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer | 1e-2 | -5.821e+00 | 0.0225 | 31.0 | 3.94% | 1084.2 | 2.29% | motif file (matrix) |
svg |
49 |
| Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer | 1e-2 | -5.706e+00 | 0.0247 | 5.0 | 0.64% | 59.9 | 0.13% | motif file (matrix) |
svg |
50 |
| GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer | 1e-2 | -5.648e+00 | 0.0257 | 51.0 | 6.49% | 2060.0 | 4.35% | motif file (matrix) |
svg |
51 |
| Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967) | 1e-2 | -5.590e+00 | 0.0267 | 53.0 | 6.74% | 2166.0 | 4.57% | motif file (matrix) |
svg |
52 |
| Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.441e+00 | 0.0303 | 33.0 | 4.20% | 1207.4 | 2.55% | motif file (matrix) |
svg |
53 |
| Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer | 1e-2 | -5.359e+00 | 0.0323 | 57.0 | 7.25% | 2394.5 | 5.06% | motif file (matrix) |
svg |
54 |
| Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer | 1e-2 | -5.356e+00 | 0.0323 | 22.0 | 2.80% | 711.8 | 1.50% | motif file (matrix) |
svg |
55 |
| CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-2 | -5.350e+00 | 0.0323 | 3.0 | 0.38% | 20.5 | 0.04% | motif file (matrix) |
svg |
56 |
| SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer | 1e-2 | -5.348e+00 | 0.0323 | 248.0 | 31.55% | 12935.1 | 27.32% | motif file (matrix) |
svg |
57 |
| TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer | 1e-2 | -5.194e+00 | 0.0354 | 40.0 | 5.09% | 1565.8 | 3.31% | motif file (matrix) |
svg |
58 |
| FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer | 1e-2 | -5.185e+00 | 0.0354 | 49.0 | 6.23% | 2011.8 | 4.25% | motif file (matrix) |
svg |
59 |
| PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer | 1e-2 | -5.174e+00 | 0.0354 | 7.0 | 0.89% | 126.7 | 0.27% | motif file (matrix) |
svg |
60 |
| Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer | 1e-2 | -5.164e+00 | 0.0354 | 110.0 | 13.99% | 5219.1 | 11.02% | motif file (matrix) |
svg |
61 |
| Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer | 1e-2 | -5.144e+00 | 0.0354 | 75.0 | 9.54% | 3352.3 | 7.08% | motif file (matrix) |
svg |
62 |
| Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer | 1e-2 | -4.937e+00 | 0.0421 | 43.0 | 5.47% | 1739.6 | 3.67% | motif file (matrix) |
svg |
63 |
| PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer | 1e-2 | -4.905e+00 | 0.0428 | 12.0 | 1.53% | 315.6 | 0.67% | motif file (matrix) |
svg |
64 |
| GFY-Staf(?,Zf)/Promoter/Homer | 1e-2 | -4.902e+00 | 0.0428 | 6.0 | 0.76% | 101.9 | 0.22% | motif file (matrix) |
svg |
65 |
| RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer | 1e-2 | -4.816e+00 | 0.0454 | 7.0 | 0.89% | 135.8 | 0.29% | motif file (matrix) |
svg |
66 |
| Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer | 1e-2 | -4.800e+00 | 0.0454 | 32.0 | 4.07% | 1215.5 | 2.57% | motif file (matrix) |
svg |
67 |
| GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-2 | -4.617e+00 | 0.0537 | 78.0 | 9.92% | 3591.8 | 7.58% | motif file (matrix) |
svg |