Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
1 |
| Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer | 1e-278 | -6.403e+02 | 0.0000 | 380.0 | 51.77% | 2460.6 | 5.16% | motif file (matrix) |
svg |
2 |
| Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer | 1e-272 | -6.279e+02 | 0.0000 | 276.0 | 37.60% | 880.2 | 1.85% | motif file (matrix) |
svg |
3 |
| FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer | 1e-242 | -5.589e+02 | 0.0000 | 407.0 | 55.45% | 3768.1 | 7.90% | motif file (matrix) |
svg |
4 |
| FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer | 1e-233 | -5.383e+02 | 0.0000 | 369.0 | 50.27% | 3006.7 | 6.31% | motif file (matrix) |
svg |
5 |
| FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer | 1e-203 | -4.675e+02 | 0.0000 | 346.0 | 47.14% | 3101.6 | 6.51% | motif file (matrix) |
svg |
6 |
| FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer | 1e-188 | -4.330e+02 | 0.0000 | 309.0 | 42.10% | 2542.1 | 5.33% | motif file (matrix) |
svg |
7 |
| FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer | 1e-174 | -4.028e+02 | 0.0000 | 326.0 | 44.41% | 3259.1 | 6.84% | motif file (matrix) |
svg |
8 |
| FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer | 1e-160 | -3.704e+02 | 0.0000 | 252.0 | 34.33% | 1840.2 | 3.86% | motif file (matrix) |
svg |
9 |
| Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer | 1e-157 | -3.617e+02 | 0.0000 | 285.0 | 38.83% | 2657.8 | 5.57% | motif file (matrix) |
svg |
10 |
| Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer | 1e-146 | -3.384e+02 | 0.0000 | 277.0 | 37.74% | 2705.2 | 5.67% | motif file (matrix) |
svg |
11 |
| Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer | 1e-145 | -3.344e+02 | 0.0000 | 261.0 | 35.56% | 2358.6 | 4.95% | motif file (matrix) |
svg |
12 |
| FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer | 1e-136 | -3.137e+02 | 0.0000 | 204.0 | 27.79% | 1337.9 | 2.81% | motif file (matrix) |
svg |
13 |
| Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer | 1e-105 | -2.433e+02 | 0.0000 | 316.0 | 43.05% | 5336.7 | 11.19% | motif file (matrix) |
svg |
14 |
| GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-20 | -4.685e+01 | 0.0000 | 152.0 | 20.71% | 4407.0 | 9.24% | motif file (matrix) |
svg |
15 |
| Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer | 1e-19 | -4.590e+01 | 0.0000 | 87.0 | 11.85% | 1790.4 | 3.76% | motif file (matrix) |
svg |
16 |
| Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer | 1e-19 | -4.554e+01 | 0.0000 | 80.0 | 10.90% | 1553.7 | 3.26% | motif file (matrix) |
svg |
17 |
| Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer | 1e-19 | -4.543e+01 | 0.0000 | 107.0 | 14.58% | 2561.2 | 5.37% | motif file (matrix) |
svg |
18 |
| Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer | 1e-18 | -4.285e+01 | 0.0000 | 112.0 | 15.26% | 2859.9 | 6.00% | motif file (matrix) |
svg |
19 |
| Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer | 1e-9 | -2.284e+01 | 0.0000 | 135.0 | 18.39% | 5013.2 | 10.52% | motif file (matrix) |
svg |
20 |
| CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer | 1e-9 | -2.084e+01 | 0.0000 | 168.0 | 22.89% | 6906.2 | 14.49% | motif file (matrix) |
svg |
21 |
| Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer | 1e-8 | -1.888e+01 | 0.0000 | 187.0 | 25.48% | 8141.5 | 17.08% | motif file (matrix) |
svg |
22 |
| Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer | 1e-7 | -1.752e+01 | 0.0000 | 68.0 | 9.26% | 2139.6 | 4.49% | motif file (matrix) |
svg |
23 |
| Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer | 1e-7 | -1.672e+01 | 0.0000 | 114.0 | 15.53% | 4436.8 | 9.31% | motif file (matrix) |
svg |
24 |
| Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer | 1e-7 | -1.616e+01 | 0.0000 | 102.0 | 13.90% | 3872.0 | 8.12% | motif file (matrix) |
svg |
25 |
| Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-6 | -1.598e+01 | 0.0000 | 40.0 | 5.45% | 1013.6 | 2.13% | motif file (matrix) |
svg |
26 |
| Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer | 1e-6 | -1.416e+01 | 0.0000 | 144.0 | 19.62% | 6285.2 | 13.18% | motif file (matrix) |
svg |
27 |
| Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer | 1e-5 | -1.371e+01 | 0.0000 | 74.0 | 10.08% | 2669.9 | 5.60% | motif file (matrix) |
svg |
28 |
| Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer | 1e-5 | -1.308e+01 | 0.0000 | 65.0 | 8.86% | 2279.3 | 4.78% | motif file (matrix) |
svg |
29 |
| GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer | 1e-5 | -1.294e+01 | 0.0000 | 85.0 | 11.58% | 3279.7 | 6.88% | motif file (matrix) |
svg |
30 |
| Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer | 1e-5 | -1.253e+01 | 0.0000 | 60.0 | 8.17% | 2078.6 | 4.36% | motif file (matrix) |
svg |
31 |
| Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer | 1e-5 | -1.200e+01 | 0.0001 | 54.0 | 7.36% | 1830.4 | 3.84% | motif file (matrix) |
svg |
32 |
| Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer | 1e-4 | -1.068e+01 | 0.0003 | 29.0 | 3.95% | 789.1 | 1.66% | motif file (matrix) |
svg |
33 |
| Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer | 1e-4 | -1.064e+01 | 0.0003 | 179.0 | 24.39% | 8727.5 | 18.31% | motif file (matrix) |
svg |
34 |
| OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-4 | -1.058e+01 | 0.0003 | 20.0 | 2.72% | 440.2 | 0.92% | motif file (matrix) |
svg |
35 |
| Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer | 1e-4 | -1.055e+01 | 0.0003 | 186.0 | 25.34% | 9150.7 | 19.19% | motif file (matrix) |
svg |
36 |
| Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer | 1e-4 | -1.033e+01 | 0.0003 | 257.0 | 35.01% | 13435.6 | 28.18% | motif file (matrix) |
svg |
37 |
| Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer | 1e-4 | -1.032e+01 | 0.0003 | 71.0 | 9.67% | 2796.1 | 5.86% | motif file (matrix) |
svg |
38 |
| Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer | 1e-4 | -9.881e+00 | 0.0005 | 104.0 | 14.17% | 4590.6 | 9.63% | motif file (matrix) |
svg |
39 |
| E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer | 1e-3 | -9.210e+00 | 0.0009 | 17.0 | 2.32% | 374.1 | 0.78% | motif file (matrix) |
svg |
40 |
| Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer | 1e-3 | -8.486e+00 | 0.0019 | 40.0 | 5.45% | 1406.4 | 2.95% | motif file (matrix) |
svg |
41 |
| Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer | 1e-3 | -8.437e+00 | 0.0019 | 43.0 | 5.86% | 1554.1 | 3.26% | motif file (matrix) |
svg |
42 |
| FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer | 1e-3 | -7.940e+00 | 0.0031 | 9.0 | 1.23% | 138.7 | 0.29% | motif file (matrix) |
svg |
43 |
| Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer | 1e-3 | -7.758e+00 | 0.0036 | 20.0 | 2.72% | 546.8 | 1.15% | motif file (matrix) |
svg |
44 |
| E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-3 | -7.427e+00 | 0.0049 | 67.0 | 9.13% | 2876.4 | 6.03% | motif file (matrix) |
svg |
45 |
| Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer | 1e-3 | -7.372e+00 | 0.0051 | 25.0 | 3.41% | 781.2 | 1.64% | motif file (matrix) |
svg |
46 |
| GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer | 1e-3 | -7.332e+00 | 0.0052 | 11.0 | 1.50% | 216.4 | 0.45% | motif file (matrix) |
svg |
47 |
| Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-3 | -7.054e+00 | 0.0067 | 32.0 | 4.36% | 1125.6 | 2.36% | motif file (matrix) |
svg |
48 |
| Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer | 1e-3 | -6.955e+00 | 0.0072 | 28.0 | 3.81% | 943.5 | 1.98% | motif file (matrix) |
svg |
49 |
| Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer | 1e-2 | -6.798e+00 | 0.0083 | 52.0 | 7.08% | 2151.1 | 4.51% | motif file (matrix) |
svg |
50 |
| Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer | 1e-2 | -6.625e+00 | 0.0097 | 18.0 | 2.45% | 514.0 | 1.08% | motif file (matrix) |
svg |
51 |
| Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer | 1e-2 | -6.449e+00 | 0.0113 | 16.0 | 2.18% | 438.4 | 0.92% | motif file (matrix) |
svg |
52 |
| BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer | 1e-2 | -6.437e+00 | 0.0113 | 33.0 | 4.50% | 1220.0 | 2.56% | motif file (matrix) |
svg |
53 |
| Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer | 1e-2 | -6.286e+00 | 0.0128 | 29.0 | 3.95% | 1036.7 | 2.17% | motif file (matrix) |
svg |
54 |
| Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer | 1e-2 | -6.173e+00 | 0.0141 | 117.0 | 15.94% | 5856.6 | 12.28% | motif file (matrix) |
svg |
55 |
| HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer | 1e-2 | -5.965e+00 | 0.0170 | 9.0 | 1.23% | 184.8 | 0.39% | motif file (matrix) |
svg |
56 |
| AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-2 | -5.958e+00 | 0.0170 | 36.0 | 4.90% | 1408.0 | 2.95% | motif file (matrix) |
svg |
57 |
| Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer | 1e-2 | -5.957e+00 | 0.0170 | 13.0 | 1.77% | 337.0 | 0.71% | motif file (matrix) |
svg |
58 |
| Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer | 1e-2 | -5.737e+00 | 0.0202 | 32.0 | 4.36% | 1226.5 | 2.57% | motif file (matrix) |
svg |
59 |
| Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer | 1e-2 | -5.529e+00 | 0.0245 | 20.0 | 2.72% | 662.5 | 1.39% | motif file (matrix) |
svg |
60 |
| REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer | 1e-2 | -5.519e+00 | 0.0245 | 2.0 | 0.27% | 6.6 | 0.01% | motif file (matrix) |
svg |
61 |
| Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.491e+00 | 0.0246 | 32.0 | 4.36% | 1247.7 | 2.62% | motif file (matrix) |
svg |
62 |
| Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer | 1e-2 | -5.354e+00 | 0.0278 | 27.0 | 3.68% | 1010.0 | 2.12% | motif file (matrix) |
svg |
63 |
| Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.076e+00 | 0.0361 | 12.0 | 1.63% | 333.0 | 0.70% | motif file (matrix) |
svg |
64 |
| MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer | 1e-2 | -5.054e+00 | 0.0363 | 12.0 | 1.63% | 333.8 | 0.70% | motif file (matrix) |
svg |
65 |
| HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer | 1e-2 | -4.790e+00 | 0.0466 | 77.0 | 10.49% | 3788.9 | 7.95% | motif file (matrix) |
svg |
66 |
| Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer | 1e-2 | -4.629e+00 | 0.0539 | 17.0 | 2.32% | 579.1 | 1.21% | motif file (matrix) |
svg |