Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 734)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 47686)	% of Background Sequences with Motif
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-278	-6.403e+02	0.0000	380.0	51.77%	2460.6	5.16%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-272	-6.279e+02	0.0000	276.0	37.60%	880.2	1.85%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-242	-5.589e+02	0.0000	407.0	55.45%	3768.1	7.90%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-233	-5.383e+02	0.0000	369.0	50.27%	3006.7	6.31%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-203	-4.675e+02	0.0000	346.0	47.14%	3101.6	6.51%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-188	-4.330e+02	0.0000	309.0	42.10%	2542.1	5.33%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-174	-4.028e+02	0.0000	326.0	44.41%	3259.1	6.84%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-160	-3.704e+02	0.0000	252.0	34.33%	1840.2	3.86%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-157	-3.617e+02	0.0000	285.0	38.83%	2657.8	5.57%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-146	-3.384e+02	0.0000	277.0	37.74%	2705.2	5.67%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-145	-3.344e+02	0.0000	261.0	35.56%	2358.6	4.95%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-136	-3.137e+02	0.0000	204.0	27.79%	1337.9	2.81%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-105	-2.433e+02	0.0000	316.0	43.05%	5336.7	11.19%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-20	-4.685e+01	0.0000	152.0	20.71%	4407.0	9.24%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-19	-4.590e+01	0.0000	87.0	11.85%	1790.4	3.76%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-19	-4.554e+01	0.0000	80.0	10.90%	1553.7	3.26%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-19	-4.543e+01	0.0000	107.0	14.58%	2561.2	5.37%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-18	-4.285e+01	0.0000	112.0	15.26%	2859.9	6.00%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-9	-2.284e+01	0.0000	135.0	18.39%	5013.2	10.52%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-9	-2.084e+01	0.0000	168.0	22.89%	6906.2	14.49%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-8	-1.888e+01	0.0000	187.0	25.48%	8141.5	17.08%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-7	-1.752e+01	0.0000	68.0	9.26%	2139.6	4.49%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-7	-1.672e+01	0.0000	114.0	15.53%	4436.8	9.31%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-7	-1.616e+01	0.0000	102.0	13.90%	3872.0	8.12%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-6	-1.598e+01	0.0000	40.0	5.45%	1013.6	2.13%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-6	-1.416e+01	0.0000	144.0	19.62%	6285.2	13.18%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-5	-1.371e+01	0.0000	74.0	10.08%	2669.9	5.60%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-5	-1.308e+01	0.0000	65.0	8.86%	2279.3	4.78%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-5	-1.294e+01	0.0000	85.0	11.58%	3279.7	6.88%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e-5	-1.253e+01	0.0000	60.0	8.17%	2078.6	4.36%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e-5	-1.200e+01	0.0001	54.0	7.36%	1830.4	3.84%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-4	-1.068e+01	0.0003	29.0	3.95%	789.1	1.66%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-4	-1.064e+01	0.0003	179.0	24.39%	8727.5	18.31%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-4	-1.058e+01	0.0003	20.0	2.72%	440.2	0.92%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-4	-1.055e+01	0.0003	186.0	25.34%	9150.7	19.19%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-4	-1.033e+01	0.0003	257.0	35.01%	13435.6	28.18%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-4	-1.032e+01	0.0003	71.0	9.67%	2796.1	5.86%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-4	-9.881e+00	0.0005	104.0	14.17%	4590.6	9.63%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-3	-9.210e+00	0.0009	17.0	2.32%	374.1	0.78%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-3	-8.486e+00	0.0019	40.0	5.45%	1406.4	2.95%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-3	-8.437e+00	0.0019	43.0	5.86%	1554.1	3.26%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-3	-7.940e+00	0.0031	9.0	1.23%	138.7	0.29%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-3	-7.758e+00	0.0036	20.0	2.72%	546.8	1.15%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-3	-7.427e+00	0.0049	67.0	9.13%	2876.4	6.03%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-3	-7.372e+00	0.0051	25.0	3.41%	781.2	1.64%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-3	-7.332e+00	0.0052	11.0	1.50%	216.4	0.45%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-3	-7.054e+00	0.0067	32.0	4.36%	1125.6	2.36%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-3	-6.955e+00	0.0072	28.0	3.81%	943.5	1.98%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-2	-6.798e+00	0.0083	52.0	7.08%	2151.1	4.51%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-2	-6.625e+00	0.0097	18.0	2.45%	514.0	1.08%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-2	-6.449e+00	0.0113	16.0	2.18%	438.4	0.92%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-2	-6.437e+00	0.0113	33.0	4.50%	1220.0	2.56%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-2	-6.286e+00	0.0128	29.0	3.95%	1036.7	2.17%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-2	-6.173e+00	0.0141	117.0	15.94%	5856.6	12.28%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e-2	-5.965e+00	0.0170	9.0	1.23%	184.8	0.39%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-2	-5.958e+00	0.0170	36.0	4.90%	1408.0	2.95%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-2	-5.957e+00	0.0170	13.0	1.77%	337.0	0.71%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-2	-5.737e+00	0.0202	32.0	4.36%	1226.5	2.57%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-2	-5.529e+00	0.0245	20.0	2.72%	662.5	1.39%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-2	-5.519e+00	0.0245	2.0	0.27%	6.6	0.01%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-2	-5.491e+00	0.0246	32.0	4.36%	1247.7	2.62%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-2	-5.354e+00	0.0278	27.0	3.68%	1010.0	2.12%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-2	-5.076e+00	0.0361	12.0	1.63%	333.0	0.70%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-2	-5.054e+00	0.0363	12.0	1.63%	333.8	0.70%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-2	-4.790e+00	0.0466	77.0	10.49%	3788.9	7.95%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-2	-4.629e+00	0.0539	17.0	2.32%	579.1	1.21%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-1	-4.401e+00	0.0666	15.0	2.04%	500.0	1.05%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-1	-4.332e+00	0.0703	10.0	1.36%	281.4	0.59%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-1	-4.319e+00	0.0703	66.0	8.99%	3238.4	6.79%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-1	-4.154e+00	0.0816	216.0	29.43%	12321.0	25.84%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-1	-4.049e+00	0.0894	5.0	0.68%	96.3	0.20%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-1	-3.943e+00	0.0981	6.0	0.82%	135.4	0.28%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-1	-3.935e+00	0.0981	20.0	2.72%	776.8	1.63%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-1	-3.933e+00	0.0981	25.0	3.41%	1032.5	2.17%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-1	-3.932e+00	0.0981	7.0	0.95%	174.1	0.37%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-1	-3.915e+00	0.0981	74.0	10.08%	3770.4	7.91%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-1	-3.856e+00	0.1000	48.0	6.54%	2292.7	4.81%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-1	-3.819e+00	0.1024	5.0	0.68%	102.1	0.21%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-1	-3.757e+00	0.1076	6.0	0.82%	141.0	0.30%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-1	-3.586e+00	0.1261	28.0	3.81%	1227.3	2.57%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-1	-3.583e+00	0.1261	33.0	4.50%	1498.4	3.14%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-1	-3.557e+00	0.1267	57.0	7.77%	2852.4	5.98%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-1	-3.274e+00	0.1660	30.0	4.09%	1373.2	2.88%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-1	-3.188e+00	0.1787	10.0	1.36%	341.1	0.72%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-1	-3.169e+00	0.1801	58.0	7.90%	2981.7	6.25%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-1	-2.943e+00	0.2232	12.0	1.63%	455.1	0.95%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-1	-2.872e+00	0.2368	34.0	4.63%	1652.7	3.47%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e-1	-2.784e+00	0.2555	74.0	10.08%	4010.7	8.41%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-1	-2.781e+00	0.2555	15.0	2.04%	622.3	1.31%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-1	-2.747e+00	0.2593	18.0	2.45%	784.1	1.64%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-1	-2.737e+00	0.2593	48.0	6.54%	2481.6	5.21%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-1	-2.735e+00	0.2593	40.0	5.45%	2017.6	4.23%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-1	-2.720e+00	0.2593	32.0	4.36%	1562.0	3.28%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-1	-2.711e+00	0.2593	41.0	5.59%	2079.9	4.36%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-1	-2.682e+00	0.2621	11.0	1.50%	425.6	0.89%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-1	-2.671e+00	0.2622	14.0	1.91%	580.3	1.22%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-1	-2.657e+00	0.2633	11.0	1.50%	427.5	0.90%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-1	-2.637e+00	0.2658	73.0	9.95%	3986.9	8.36%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-1	-2.583e+00	0.2778	13.0	1.77%	536.3	1.12%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-1	-2.565e+00	0.2799	21.0	2.86%	968.7	2.03%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-1	-2.549e+00	0.2816	35.0	4.77%	1761.5	3.69%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-1	-2.546e+00	0.2816	26.0	3.54%	1249.9	2.62%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-1	-2.428e+00	0.3119	1.0	0.14%	6.4	0.01%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-1	-2.412e+00	0.3136	9.0	1.23%	345.2	0.72%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-1	-2.377e+00	0.3217	53.0	7.22%	2851.2	5.98%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-1	-2.304e+00	0.3428	26.0	3.54%	1285.3	2.70%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-2.301e+00	0.3428	56.0	7.63%	3048.6	6.39%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-2.221e+00	0.3659	187.0	25.48%	11190.2	23.47%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-2.153e+00	0.3878	80.0	10.90%	4543.2	9.53%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-2.120e+00	0.3974	54.0	7.36%	2972.2	6.23%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-2.117e+00	0.3974	5.0	0.68%	168.2	0.35%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e0	-2.112e+00	0.3974	35.0	4.77%	1841.4	3.86%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-2.056e+00	0.4122	54.0	7.36%	2988.3	6.27%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-2.029e+00	0.4199	31.0	4.22%	1622.6	3.40%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-2.027e+00	0.4199	34.0	4.63%	1799.7	3.78%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-2.008e+00	0.4214	31.0	4.22%	1626.4	3.41%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-2.004e+00	0.4214	43.0	5.86%	2339.3	4.91%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-1.986e+00	0.4232	33.0	4.50%	1748.1	3.67%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-1.979e+00	0.4232	29.0	3.95%	1514.3	3.18%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.914e+00	0.4475	5.0	0.68%	180.1	0.38%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-1.911e+00	0.4475	8.0	1.09%	334.6	0.70%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-1.911e+00	0.4475	2.0	0.27%	44.6	0.09%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-1.887e+00	0.4486	49.0	6.68%	2729.5	5.73%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-1.870e+00	0.4526	4.0	0.54%	134.1	0.28%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-1.867e+00	0.4526	32.0	4.36%	1713.9	3.59%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-1.827e+00	0.4646	37.0	5.04%	2020.5	4.24%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.814e+00	0.4671	22.0	3.00%	1134.7	2.38%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.790e+00	0.4750	44.0	5.99%	2451.8	5.14%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.787e+00	0.4750	13.0	1.77%	621.9	1.30%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-1.752e+00	0.4858	30.0	4.09%	1618.8	3.40%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-1.750e+00	0.4858	59.0	8.04%	3377.0	7.08%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.728e+00	0.4898	60.0	8.17%	3445.3	7.23%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.728e+00	0.4898	4.0	0.54%	142.8	0.30%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.728e+00	0.4898	4.0	0.54%	142.8	0.30%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.705e+00	0.4903	8.0	1.09%	353.4	0.74%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-1.679e+00	0.4994	21.0	2.86%	1099.0	2.31%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-1.678e+00	0.4994	6.0	0.82%	248.4	0.52%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.669e+00	0.4994	64.0	8.72%	3710.3	7.78%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-1.640e+00	0.5079	58.0	7.90%	3349.8	7.03%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-1.623e+00	0.5129	20.0	2.72%	1050.2	2.20%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-1.600e+00	0.5213	39.0	5.31%	2196.5	4.61%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-1.593e+00	0.5214	10.0	1.36%	476.8	1.00%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-1.587e+00	0.5214	17.0	2.32%	880.7	1.85%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.582e+00	0.5214	9.0	1.23%	422.0	0.89%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-1.570e+00	0.5221	27.0	3.68%	1477.7	3.10%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-1.556e+00	0.5259	26.0	3.54%	1420.9	2.98%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-1.547e+00	0.5273	36.0	4.90%	2027.4	4.25%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.468e+00	0.5665	1.0	0.14%	17.7	0.04%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-1.467e+00	0.5665	29.0	3.95%	1621.6	3.40%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-1.431e+00	0.5799	5.0	0.68%	216.0	0.45%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.424e+00	0.5805	51.0	6.95%	2985.5	6.26%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-1.420e+00	0.5805	155.0	21.12%	9545.1	20.02%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-1.397e+00	0.5883	22.0	3.00%	1213.7	2.55%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-1.386e+00	0.5908	37.0	5.04%	2131.0	4.47%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.385e+00	0.5908	30.0	4.09%	1702.3	3.57%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.378e+00	0.5908	13.0	1.77%	679.4	1.43%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.373e+00	0.5908	3.0	0.41%	113.5	0.24%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.344e+00	0.6011	4.0	0.54%	168.5	0.35%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-1.268e+00	0.6445	2.0	0.27%	68.8	0.14%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.251e+00	0.6513	14.0	1.91%	761.0	1.60%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-1.246e+00	0.6513	32.0	4.36%	1862.9	3.91%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.235e+00	0.6534	76.0	10.35%	4623.2	9.70%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.234e+00	0.6534	83.0	11.31%	5066.1	10.63%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.233e+00	0.6534	16.0	2.18%	884.3	1.85%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.230e+00	0.6534	11.0	1.50%	584.3	1.23%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-1.223e+00	0.6534	68.0	9.26%	4123.5	8.65%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-1.221e+00	0.6534	17.0	2.32%	947.3	1.99%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-1.211e+00	0.6534	19.0	2.59%	1071.0	2.25%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-1.172e+00	0.6673	148.0	20.16%	9241.0	19.38%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-1.148e+00	0.6790	19.0	2.59%	1085.8	2.28%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-1.132e+00	0.6859	21.0	2.86%	1212.6	2.54%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-1.124e+00	0.6879	13.0	1.77%	723.8	1.52%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-1.066e+00	0.7248	12.0	1.63%	673.5	1.41%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-1.055e+00	0.7285	25.0	3.41%	1481.0	3.11%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-1.047e+00	0.7304	35.0	4.77%	2112.0	4.43%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-9.985e-01	0.7620	6.0	0.82%	319.8	0.67%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-9.955e-01	0.7620	3.0	0.41%	141.8	0.30%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-9.936e-01	0.7620	13.0	1.77%	749.6	1.57%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-9.794e-01	0.7637	27.0	3.68%	1629.9	3.42%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-9.772e-01	0.7637	2.0	0.27%	85.2	0.18%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-9.711e-01	0.7637	34.0	4.63%	2074.2	4.35%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-9.652e-01	0.7637	4.0	0.54%	204.0	0.43%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-9.629e-01	0.7637	2.0	0.27%	86.0	0.18%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-9.488e-01	0.7660	2.0	0.27%	87.8	0.18%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-9.439e-01	0.7660	1.0	0.14%	32.4	0.07%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-9.226e-01	0.7778	8.0	1.09%	453.2	0.95%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-9.202e-01	0.7778	1.0	0.14%	33.2	0.07%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-9.200e-01	0.7778	11.0	1.50%	640.6	1.34%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-9.080e-01	0.7778	2.0	0.27%	90.8	0.19%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-8.997e-01	0.7791	8.0	1.09%	457.4	0.96%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-8.831e-01	0.7880	10.0	1.36%	585.5	1.23%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-8.806e-01	0.7880	46.0	6.27%	2874.5	6.03%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-8.142e-01	0.8355	3.0	0.41%	159.4	0.33%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-8.141e-01	0.8355	1.0	0.14%	38.6	0.08%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-8.085e-01	0.8355	30.0	4.09%	1879.7	3.94%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-8.066e-01	0.8355	13.0	1.77%	792.3	1.66%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-8.008e-01	0.8355	38.0	5.18%	2396.6	5.03%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-7.704e-01	0.8508	3.0	0.41%	164.2	0.34%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-7.617e-01	0.8540	15.0	2.04%	932.0	1.95%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-7.570e-01	0.8540	25.0	3.41%	1577.0	3.31%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-7.326e-01	0.8704	2.0	0.27%	105.7	0.22%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-7.299e-01	0.8704	5.0	0.68%	297.4	0.62%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-7.291e-01	0.8704	3.0	0.41%	169.9	0.36%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-7.275e-01	0.8704	7.0	0.95%	426.4	0.89%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-6.955e-01	0.8857	11.0	1.50%	692.7	1.45%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-6.840e-01	0.8916	65.0	8.86%	4205.0	8.82%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-6.832e-01	0.8916	2.0	0.27%	110.6	0.23%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-6.757e-01	0.8916	9.0	1.23%	567.5	1.19%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-6.742e-01	0.8916	7.0	0.95%	437.4	0.92%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-6.742e-01	0.8916	7.0	0.95%	437.2	0.92%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-6.742e-01	0.8916	24.0	3.27%	1544.5	3.24%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-6.625e-01	0.8916	98.0	13.35%	6364.2	13.35%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-6.578e-01	0.8916	4.0	0.54%	244.7	0.51%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-6.557e-01	0.8916	7.0	0.95%	441.6	0.93%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-6.553e-01	0.8916	2.0	0.27%	113.3	0.24%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-6.489e-01	0.8916	1.0	0.14%	48.3	0.10%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-6.472e-01	0.8916	13.0	1.77%	836.8	1.76%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-6.375e-01	0.8916	2.0	0.27%	115.3	0.24%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-6.322e-01	0.8916	3.0	0.41%	182.6	0.38%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-6.203e-01	0.8916	8.0	1.09%	515.9	1.08%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-6.202e-01	0.8916	2.0	0.27%	117.4	0.25%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-6.202e-01	0.8916	2.0	0.27%	117.6	0.25%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-6.193e-01	0.8916	11.0	1.50%	713.5	1.50%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-6.003e-01	0.8916	8.0	1.09%	520.4	1.09%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-5.921e-01	0.8949	29.0	3.95%	1907.5	4.00%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-5.914e-01	0.8949	10.0	1.36%	655.1	1.37%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-5.670e-01	0.9096	17.0	2.32%	1127.4	2.36%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-5.607e-01	0.9113	3.0	0.41%	193.5	0.41%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-5.558e-01	0.9118	28.0	3.81%	1859.1	3.90%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-5.497e-01	0.9134	27.0	3.68%	1796.6	3.77%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-5.469e-01	0.9134	20.0	2.72%	1334.8	2.80%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-5.425e-01	0.9134	80.0	10.90%	5285.3	11.09%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-5.407e-01	0.9134	33.0	4.50%	2197.6	4.61%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-5.057e-01	0.9381	24.0	3.27%	1619.4	3.40%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-4.965e-01	0.9428	4.0	0.54%	274.9	0.58%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e0	-4.915e-01	0.9434	35.0	4.77%	2358.6	4.95%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-4.814e-01	0.9490	3.0	0.41%	207.4	0.43%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-4.704e-01	0.9555	7.0	0.95%	488.5	1.02%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-4.671e-01	0.9555	22.0	3.00%	1505.9	3.16%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-4.669e-01	0.9555	1.0	0.14%	65.0	0.14%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-4.646e-01	0.9555	102.0	13.90%	6801.7	14.27%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-4.596e-01	0.9555	54.0	7.36%	3640.5	7.64%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-4.495e-01	0.9556	46.0	6.27%	3117.1	6.54%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-4.493e-01	0.9556	10.0	1.36%	702.0	1.47%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-4.486e-01	0.9556	64.0	8.72%	4311.8	9.04%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-4.404e-01	0.9556	1.0	0.14%	67.6	0.14%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-4.242e-01	0.9642	8.0	1.09%	572.1	1.20%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-4.237e-01	0.9642	1.0	0.14%	69.4	0.15%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-4.172e-01	0.9642	24.0	3.27%	1667.4	3.50%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-3.962e-01	0.9797	8.0	1.09%	582.2	1.22%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-3.940e-01	0.9797	91.0	12.40%	6151.8	12.90%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-3.926e-01	0.9797	1.0	0.14%	73.3	0.15%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-3.815e-01	0.9824	44.0	5.99%	3037.8	6.37%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-3.813e-01	0.9824	13.0	1.77%	936.2	1.96%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-3.627e-01	0.9932	2.0	0.27%	157.1	0.33%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-3.568e-01	0.9951	13.0	1.77%	948.2	1.99%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-3.494e-01	0.9987	6.0	0.82%	457.5	0.96%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-3.474e-01	0.9987	3.0	0.41%	238.0	0.50%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-3.436e-01	0.9987	3.0	0.41%	238.0	0.50%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-3.383e-01	0.9987	1.0	0.14%	81.0	0.17%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-3.356e-01	0.9987	8.0	1.09%	606.2	1.27%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-3.316e-01	0.9987	12.0	1.63%	891.7	1.87%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-3.148e-01	1.0000	4.0	0.54%	322.4	0.68%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-2.926e-01	1.0000	1.0	0.14%	89.4	0.19%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-2.832e-01	1.0000	4.0	0.54%	333.4	0.70%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-2.828e-01	1.0000	2.0	0.27%	176.5	0.37%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-2.814e-01	1.0000	55.0	7.49%	3876.3	8.13%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-2.806e-01	1.0000	9.0	1.23%	704.0	1.48%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-2.789e-01	1.0000	7.0	0.95%	560.0	1.17%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-2.737e-01	1.0000	34.0	4.63%	2456.9	5.15%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-2.704e-01	1.0000	70.0	9.54%	4901.9	10.28%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-2.647e-01	1.0000	4.0	0.54%	340.7	0.71%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-2.638e-01	1.0000	8.0	1.09%	640.9	1.34%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-2.440e-01	1.0000	83.0	11.31%	5813.5	12.19%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-2.319e-01	1.0000	12.0	1.63%	951.1	2.00%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-2.305e-01	1.0000	7.0	0.95%	585.0	1.23%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-2.287e-01	1.0000	1.0	0.14%	103.8	0.22%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-2.209e-01	1.0000	2.0	0.27%	195.7	0.41%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-2.113e-01	1.0000	13.0	1.77%	1039.9	2.18%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-2.102e-01	1.0000	12.0	1.63%	967.7	2.03%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-2.087e-01	1.0000	13.0	1.77%	1041.7	2.19%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-2.076e-01	1.0000	12.0	1.63%	969.3	2.03%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-2.054e-01	1.0000	5.0	0.68%	445.7	0.93%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-1.932e-01	1.0000	9.0	1.23%	758.6	1.59%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-1.929e-01	1.0000	5.0	0.68%	452.9	0.95%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-1.926e-01	1.0000	1.0	0.14%	113.1	0.24%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.756e-01	1.0000	4.0	0.54%	382.6	0.80%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-1.754e-01	1.0000	21.0	2.86%	1650.2	3.46%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-1.687e-01	1.0000	4.0	0.54%	386.0	0.81%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-1.639e-01	1.0000	5.0	0.68%	470.1	0.99%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-1.609e-01	1.0000	20.0	2.72%	1595.7	3.35%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-1.592e-01	1.0000	10.0	1.36%	861.1	1.81%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-1.581e-01	1.0000	5.0	0.68%	474.4	1.00%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.547e-01	1.0000	1.0	0.14%	126.4	0.27%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.400e-01	1.0000	1.0	0.14%	132.0	0.28%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.371e-01	1.0000	31.0	4.22%	2416.3	5.07%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.332e-01	1.0000	1.0	0.14%	135.7	0.28%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-1.319e-01	1.0000	9.0	1.23%	811.9	1.70%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.295e-01	1.0000	11.0	1.50%	967.9	2.03%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-1.289e-01	1.0000	26.0	3.54%	2072.0	4.35%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-1.268e-01	1.0000	1.0	0.14%	138.1	0.29%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-1.251e-01	1.0000	6.0	0.82%	581.7	1.22%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.168e-01	1.0000	1.0	0.14%	143.3	0.30%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.165e-01	1.0000	3.0	0.41%	336.5	0.71%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.164e-01	1.0000	4.0	0.54%	424.0	0.89%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-9.924e-02	1.0000	1.0	0.14%	153.4	0.32%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-9.882e-02	1.0000	21.0	2.86%	1760.2	3.69%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-9.803e-02	1.0000	47.0	6.40%	3629.3	7.61%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-9.764e-02	1.0000	1.0	0.14%	154.9	0.32%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-9.567e-02	1.0000	16.0	2.18%	1393.9	2.92%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-9.453e-02	1.0000	1.0	0.14%	156.8	0.33%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-9.364e-02	1.0000	6.0	0.82%	614.6	1.29%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-9.062e-02	1.0000	9.0	1.23%	861.4	1.81%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-8.579e-02	1.0000	1.0	0.14%	162.8	0.34%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-8.470e-02	1.0000	79.0	10.76%	5900.5	12.38%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-8.464e-02	1.0000	39.0	5.31%	3097.1	6.50%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-8.442e-02	1.0000	1.0	0.14%	163.1	0.34%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-7.189e-02	1.0000	1.0	0.14%	173.8	0.36%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-7.034e-02	1.0000	4.0	0.54%	472.9	0.99%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-6.746e-02	1.0000	4.0	0.54%	476.7	1.00%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-6.591e-02	1.0000	9.0	1.23%	902.1	1.89%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-6.531e-02	1.0000	1.0	0.14%	179.5	0.38%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-5.797e-02	1.0000	2.0	0.27%	298.6	0.63%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-5.573e-02	1.0000	2.0	0.27%	301.3	0.63%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-5.149e-02	1.0000	33.0	4.50%	2770.3	5.81%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-4.880e-02	1.0000	3.0	0.41%	412.6	0.87%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-4.761e-02	1.0000	2.0	0.27%	314.0	0.66%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-4.712e-02	1.0000	3.0	0.41%	415.7	0.87%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-4.388e-02	1.0000	27.0	3.68%	2356.8	4.94%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-4.341e-02	1.0000	21.0	2.86%	1904.5	3.99%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-3.442e-02	1.0000	27.0	3.68%	2400.9	5.04%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-3.433e-02	1.0000	12.0	1.63%	1231.6	2.58%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-3.396e-02	1.0000	6.0	0.82%	724.6	1.52%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-3.396e-02	1.0000	20.0	2.72%	1868.0	3.92%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-3.017e-02	1.0000	12.0	1.63%	1248.6	2.62%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-2.653e-02	1.0000	1.0	0.14%	236.1	0.50%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-2.098e-02	1.0000	1.0	0.14%	251.2	0.53%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-1.940e-02	1.0000	1.0	0.14%	256.1	0.54%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-1.831e-02	1.0000	35.0	4.77%	3118.7	6.54%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.233e-02	1.0000	3.0	0.41%	527.9	1.11%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-1.144e-02	1.0000	19.0	2.59%	1951.6	4.09%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-1.094e-02	1.0000	18.0	2.45%	1876.6	3.94%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-9.610e-03	1.0000	16.0	2.18%	1729.8	3.63%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-8.062e-03	1.0000	11.0	1.50%	1325.7	2.78%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-6.724e-03	1.0000	1.0	0.14%	324.6	0.68%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-4.202e-03	1.0000	5.0	0.68%	829.4	1.74%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-3.741e-03	1.0000	117.0	15.94%	9397.1	19.71%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	0.000e+00	1.0000	0.0	0.00%	12.3	0.03%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	0.000e+00	1.0000	0.0	0.00%	27.5	0.06%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	0.000e+00	1.0000	0.0	0.00%	46.6	0.10%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	10.5	0.02%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	0.000e+00	1.0000	0.0	0.00%	398.3	0.84%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	0.000e+00	1.0000	0.0	0.00%	83.6	0.18%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	0.000e+00	1.0000	0.0	0.00%	35.4	0.07%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	8.9	0.02%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	0.000e+00	1.0000	0.0	0.00%	120.9	0.25%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	0.000e+00	1.0000	0.0	0.00%	119.9	0.25%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	0.000e+00	1.0000	0.0	0.00%	56.9	0.12%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	26.6	0.06%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	0.000e+00	1.0000	0.0	0.00%	18.7	0.04%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	3.8	0.01%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	14.3	0.03%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	9.6	0.02%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	0.000e+00	1.0000	0.0	0.00%	67.6	0.14%