Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
1 |
| Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer | 1e-105 | -2.421e+02 | 0.0000 | 153.0 | 19.42% | 841.2 | 1.79% | motif file (matrix) |
svg |
2 |
| USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer | 1e-96 | -2.212e+02 | 0.0000 | 173.0 | 21.95% | 1342.4 | 2.86% | motif file (matrix) |
svg |
3 |
| CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer | 1e-83 | -1.934e+02 | 0.0000 | 176.0 | 22.34% | 1675.7 | 3.57% | motif file (matrix) |
svg |
4 |
| MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer | 1e-83 | -1.917e+02 | 0.0000 | 202.0 | 25.63% | 2320.5 | 4.95% | motif file (matrix) |
svg |
5 |
| TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer | 1e-76 | -1.756e+02 | 0.0000 | 77.0 | 9.77% | 196.8 | 0.42% | motif file (matrix) |
svg |
6 |
| BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer | 1e-67 | -1.546e+02 | 0.0000 | 148.0 | 18.78% | 1479.0 | 3.15% | motif file (matrix) |
svg |
7 |
| JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer | 1e-66 | -1.525e+02 | 0.0000 | 139.0 | 17.64% | 1302.8 | 2.78% | motif file (matrix) |
svg |
8 |
| Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer | 1e-66 | -1.521e+02 | 0.0000 | 149.0 | 18.91% | 1531.7 | 3.27% | motif file (matrix) |
svg |
9 |
| BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer | 1e-65 | -1.506e+02 | 0.0000 | 273.0 | 34.64% | 5330.6 | 11.37% | motif file (matrix) |
svg |
10 |
| Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-64 | -1.489e+02 | 0.0000 | 98.0 | 12.44% | 563.9 | 1.20% | motif file (matrix) |
svg |
11 |
| Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer | 1e-64 | -1.488e+02 | 0.0000 | 136.0 | 17.26% | 1276.5 | 2.72% | motif file (matrix) |
svg |
12 |
| AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-64 | -1.476e+02 | 0.0000 | 155.0 | 19.67% | 1731.9 | 3.69% | motif file (matrix) |
svg |
13 |
| Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer | 1e-62 | -1.450e+02 | 0.0000 | 111.0 | 14.09% | 810.3 | 1.73% | motif file (matrix) |
svg |
14 |
| Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer | 1e-62 | -1.448e+02 | 0.0000 | 128.0 | 16.24% | 1147.2 | 2.45% | motif file (matrix) |
svg |
15 |
| CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-60 | -1.387e+02 | 0.0000 | 64.0 | 8.12% | 183.1 | 0.39% | motif file (matrix) |
svg |
16 |
| NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer | 1e-53 | -1.225e+02 | 0.0000 | 190.0 | 24.11% | 3151.9 | 6.72% | motif file (matrix) |
svg |
17 |
| E-box(bHLH)/Promoter/Homer | 1e-51 | -1.180e+02 | 0.0000 | 59.0 | 7.49% | 201.2 | 0.43% | motif file (matrix) |
svg |
18 |
| c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer | 1e-47 | -1.091e+02 | 0.0000 | 125.0 | 15.86% | 1517.5 | 3.24% | motif file (matrix) |
svg |
19 |
| NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer | 1e-43 | -1.008e+02 | 0.0000 | 221.0 | 28.05% | 4789.5 | 10.21% | motif file (matrix) |
svg |
20 |
| n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer | 1e-41 | -9.519e+01 | 0.0000 | 136.0 | 17.26% | 2054.2 | 4.38% | motif file (matrix) |
svg |
21 |
| Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer | 1e-40 | -9.398e+01 | 0.0000 | 129.0 | 16.37% | 1875.0 | 4.00% | motif file (matrix) |
svg |
22 |
| bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer | 1e-40 | -9.351e+01 | 0.0000 | 94.0 | 11.93% | 976.9 | 2.08% | motif file (matrix) |
svg |
23 |
| BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-34 | -8.027e+01 | 0.0000 | 54.0 | 6.85% | 320.1 | 0.68% | motif file (matrix) |
svg |
24 |
| Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer | 1e-28 | -6.575e+01 | 0.0000 | 56.0 | 7.11% | 471.2 | 1.00% | motif file (matrix) |
svg |
25 |
| c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer | 1e-14 | -3.453e+01 | 0.0000 | 71.0 | 9.01% | 1416.2 | 3.02% | motif file (matrix) |
svg |
26 |
| CRE(bZIP)/Promoter/Homer | 1e-12 | -2.945e+01 | 0.0000 | 42.0 | 5.33% | 633.6 | 1.35% | motif file (matrix) |
svg |
27 |
| MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer | 1e-11 | -2.702e+01 | 0.0000 | 34.0 | 4.31% | 459.4 | 0.98% | motif file (matrix) |
svg |
28 |
| NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer | 1e-11 | -2.700e+01 | 0.0000 | 19.0 | 2.41% | 128.5 | 0.27% | motif file (matrix) |
svg |
29 |
| Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer | 1e-10 | -2.436e+01 | 0.0000 | 16.0 | 2.03% | 98.2 | 0.21% | motif file (matrix) |
svg |
30 |
| Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer | 1e-10 | -2.340e+01 | 0.0000 | 239.0 | 30.33% | 9647.3 | 20.57% | motif file (matrix) |
svg |
31 |
| Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer | 1e-9 | -2.300e+01 | 0.0000 | 32.0 | 4.06% | 478.5 | 1.02% | motif file (matrix) |
svg |
32 |
| Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer | 1e-9 | -2.296e+01 | 0.0000 | 16.0 | 2.03% | 108.1 | 0.23% | motif file (matrix) |
svg |
33 |
| NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-8 | -1.964e+01 | 0.0000 | 40.0 | 5.08% | 807.4 | 1.72% | motif file (matrix) |
svg |
34 |
| Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer | 1e-7 | -1.759e+01 | 0.0000 | 64.0 | 8.12% | 1788.9 | 3.82% | motif file (matrix) |
svg |
35 |
| HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer | 1e-6 | -1.488e+01 | 0.0000 | 100.0 | 12.69% | 3544.8 | 7.56% | motif file (matrix) |
svg |
36 |
| Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer | 1e-6 | -1.460e+01 | 0.0000 | 28.0 | 3.55% | 553.6 | 1.18% | motif file (matrix) |
svg |
37 |
| CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer | 1e-5 | -1.344e+01 | 0.0000 | 43.0 | 5.46% | 1144.4 | 2.44% | motif file (matrix) |
svg |
38 |
| NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-5 | -1.269e+01 | 0.0000 | 120.0 | 15.23% | 4699.7 | 10.02% | motif file (matrix) |
svg |
39 |
| TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer | 1e-5 | -1.236e+01 | 0.0000 | 47.0 | 5.96% | 1359.2 | 2.90% | motif file (matrix) |
svg |
40 |
| Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-4 | -1.149e+01 | 0.0001 | 33.0 | 4.19% | 841.8 | 1.80% | motif file (matrix) |
svg |
41 |
| KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer | 1e-4 | -1.144e+01 | 0.0001 | 80.0 | 10.15% | 2886.5 | 6.16% | motif file (matrix) |
svg |
42 |
| CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer | 1e-4 | -1.088e+01 | 0.0002 | 49.0 | 6.22% | 1527.8 | 3.26% | motif file (matrix) |
svg |
43 |
| MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer | 1e-4 | -1.057e+01 | 0.0002 | 59.0 | 7.49% | 1988.4 | 4.24% | motif file (matrix) |
svg |
44 |
| Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer | 1e-4 | -1.031e+01 | 0.0003 | 21.0 | 2.66% | 445.9 | 0.95% | motif file (matrix) |
svg |
45 |
| MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer | 1e-4 | -1.019e+01 | 0.0003 | 31.0 | 3.93% | 820.1 | 1.75% | motif file (matrix) |
svg |
46 |
| Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer | 1e-4 | -9.855e+00 | 0.0004 | 58.0 | 7.36% | 1995.1 | 4.25% | motif file (matrix) |
svg |
47 |
| KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer | 1e-4 | -9.771e+00 | 0.0004 | 64.0 | 8.12% | 2277.2 | 4.86% | motif file (matrix) |
svg |
48 |
| Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer | 1e-4 | -9.304e+00 | 0.0007 | 48.0 | 6.09% | 1585.6 | 3.38% | motif file (matrix) |
svg |
49 |
| Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer | 1e-4 | -9.241e+00 | 0.0007 | 114.0 | 14.47% | 4775.8 | 10.19% | motif file (matrix) |
svg |
50 |
| THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer | 1e-3 | -8.467e+00 | 0.0015 | 219.0 | 27.79% | 10488.9 | 22.37% | motif file (matrix) |
svg |
51 |
| Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer | 1e-3 | -8.384e+00 | 0.0016 | 197.0 | 25.00% | 9295.3 | 19.82% | motif file (matrix) |
svg |
52 |
| ETS(ETS)/Promoter/Homer | 1e-3 | -8.232e+00 | 0.0019 | 26.0 | 3.30% | 713.1 | 1.52% | motif file (matrix) |
svg |
53 |
| KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer | 1e-3 | -8.024e+00 | 0.0022 | 30.0 | 3.81% | 887.4 | 1.89% | motif file (matrix) |
svg |
54 |
| PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer | 1e-3 | -7.879e+00 | 0.0026 | 11.0 | 1.40% | 185.2 | 0.39% | motif file (matrix) |
svg |
55 |
| Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer | 1e-3 | -7.808e+00 | 0.0027 | 39.0 | 4.95% | 1289.0 | 2.75% | motif file (matrix) |
svg |
56 |
| RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer | 1e-3 | -7.667e+00 | 0.0030 | 46.0 | 5.84% | 1615.0 | 3.44% | motif file (matrix) |
svg |
57 |
| AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer | 1e-3 | -7.481e+00 | 0.0036 | 62.0 | 7.87% | 2384.6 | 5.09% | motif file (matrix) |
svg |
58 |
| TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer | 1e-3 | -7.407e+00 | 0.0038 | 33.0 | 4.19% | 1051.1 | 2.24% | motif file (matrix) |
svg |
59 |
| TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer | 1e-3 | -7.317e+00 | 0.0041 | 50.0 | 6.35% | 1828.5 | 3.90% | motif file (matrix) |
svg |
60 |
| Sp1(Zf)/Promoter/Homer | 1e-3 | -7.294e+00 | 0.0041 | 18.0 | 2.28% | 443.0 | 0.94% | motif file (matrix) |
svg |
61 |
| AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer | 1e-3 | -7.284e+00 | 0.0041 | 49.0 | 6.22% | 1784.7 | 3.81% | motif file (matrix) |
svg |
62 |
| HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer | 1e-3 | -7.267e+00 | 0.0041 | 39.0 | 4.95% | 1326.1 | 2.83% | motif file (matrix) |
svg |
63 |
| FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer | 1e-3 | -7.075e+00 | 0.0049 | 50.0 | 6.35% | 1849.8 | 3.95% | motif file (matrix) |
svg |
64 |
| Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer | 1e-3 | -6.948e+00 | 0.0055 | 34.0 | 4.31% | 1125.2 | 2.40% | motif file (matrix) |
svg |
65 |
| FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer | 1e-3 | -6.909e+00 | 0.0056 | 23.0 | 2.92% | 658.0 | 1.40% | motif file (matrix) |
svg |
66 |
| Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer | 1e-2 | -6.525e+00 | 0.0081 | 25.0 | 3.17% | 761.2 | 1.62% | motif file (matrix) |
svg |
67 |
| Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer | 1e-2 | -6.490e+00 | 0.0083 | 25.0 | 3.17% | 763.3 | 1.63% | motif file (matrix) |
svg |
68 |
| Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer | 1e-2 | -6.343e+00 | 0.0094 | 23.0 | 2.92% | 687.7 | 1.47% | motif file (matrix) |
svg |
69 |
| Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-2 | -6.308e+00 | 0.0096 | 219.0 | 27.79% | 10912.4 | 23.27% | motif file (matrix) |
svg |
70 |
| KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer | 1e-2 | -6.088e+00 | 0.0118 | 87.0 | 11.04% | 3798.4 | 8.10% | motif file (matrix) |
svg |
71 |
| FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer | 1e-2 | -6.033e+00 | 0.0123 | 35.0 | 4.44% | 1237.4 | 2.64% | motif file (matrix) |
svg |
72 |
| FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer | 1e-2 | -5.870e+00 | 0.0143 | 42.0 | 5.33% | 1578.5 | 3.37% | motif file (matrix) |
svg |
73 |
| Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer | 1e-2 | -5.625e+00 | 0.0180 | 17.0 | 2.16% | 478.0 | 1.02% | motif file (matrix) |
svg |
74 |
| c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.622e+00 | 0.0180 | 22.0 | 2.79% | 686.4 | 1.46% | motif file (matrix) |
svg |
75 |
| BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer | 1e-2 | -5.618e+00 | 0.0180 | 80.0 | 10.15% | 3502.3 | 7.47% | motif file (matrix) |
svg |
76 |
| FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer | 1e-2 | -5.541e+00 | 0.0188 | 33.0 | 4.19% | 1184.3 | 2.53% | motif file (matrix) |
svg |
77 |
| GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer | 1e-2 | -5.464e+00 | 0.0200 | 49.0 | 6.22% | 1956.9 | 4.17% | motif file (matrix) |
svg |
78 |
| FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer | 1e-2 | -5.385e+00 | 0.0214 | 38.0 | 4.82% | 1432.1 | 3.05% | motif file (matrix) |
svg |
79 |
| Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer | 1e-2 | -5.334e+00 | 0.0222 | 45.0 | 5.71% | 1774.2 | 3.78% | motif file (matrix) |
svg |
80 |
| Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer | 1e-2 | -5.238e+00 | 0.0242 | 34.0 | 4.31% | 1256.8 | 2.68% | motif file (matrix) |
svg |
81 |
| GFY-Staf(?,Zf)/Promoter/Homer | 1e-2 | -5.230e+00 | 0.0242 | 6.0 | 0.76% | 93.3 | 0.20% | motif file (matrix) |
svg |
82 |
| RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer | 1e-2 | -5.227e+00 | 0.0242 | 56.0 | 7.11% | 2330.4 | 4.97% | motif file (matrix) |
svg |
83 |
| HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer | 1e-2 | -5.187e+00 | 0.0245 | 31.0 | 3.93% | 1120.8 | 2.39% | motif file (matrix) |
svg |
84 |
| ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer | 1e-2 | -5.127e+00 | 0.0257 | 31.0 | 3.93% | 1125.6 | 2.40% | motif file (matrix) |
svg |
85 |
| AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer | 1e-2 | -5.096e+00 | 0.0262 | 82.0 | 10.41% | 3682.0 | 7.85% | motif file (matrix) |
svg |
86 |
| Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer | 1e-2 | -4.959e+00 | 0.0297 | 36.0 | 4.57% | 1376.9 | 2.94% | motif file (matrix) |
svg |
87 |
| EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer | 1e-2 | -4.868e+00 | 0.0322 | 32.0 | 4.06% | 1194.1 | 2.55% | motif file (matrix) |
svg |
88 |
| Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer | 1e-2 | -4.813e+00 | 0.0336 | 39.0 | 4.95% | 1535.5 | 3.27% | motif file (matrix) |
svg |
89 |
| ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer | 1e-2 | -4.765e+00 | 0.0349 | 72.0 | 9.14% | 3210.7 | 6.85% | motif file (matrix) |
svg |
90 |
| Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer | 1e-2 | -4.747e+00 | 0.0351 | 59.0 | 7.49% | 2542.1 | 5.42% | motif file (matrix) |
svg |
91 |
| EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer | 1e-2 | -4.688e+00 | 0.0368 | 14.0 | 1.78% | 401.8 | 0.86% | motif file (matrix) |
svg |
92 |
| GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-2 | -4.667e+00 | 0.0372 | 6.0 | 0.76% | 105.8 | 0.23% | motif file (matrix) |
svg |
93 |
| EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer | 1e-2 | -4.646e+00 | 0.0376 | 63.0 | 7.99% | 2761.8 | 5.89% | motif file (matrix) |
svg |