NAIK Genome Database

experiment name	hs_ColonAdenocarcinoma_LoVo_cancer_CTCF_SRX360020	number of peaks	28912
antibody	CTCF	link to motif view if antibody and consensus motif is the same
cell line	LOVO	Number of reads	4685302
sra ftp link	link	SRX search	link
homer denovo motifs	link
Genome view	link

Overlapping motifs:

Motif name	Number of overlap
CTCF	5037
MYC	1297
MYCN	1159
Tcf12	982
TCF4	825
ZEB1	715
SP1	708
NFIC	700
TAL1::TCF3	650
NR2F1	542
TCF3	519
MYBL1	432
Sox2	396
RUNX3	385
RUNX1	382
ZBTB7A	377
STAT3	345
Gabpa	326
MAX	322
ERG	307
E2F4	304
Esrrg	292
ELF1	291
FOXA1	283
ZNF740	261
YY1	260
TFAP2C	252
TFAP2A	238
MAX::MYC	228
TFAP4	223
TEAD4	215
TFAP2A-var.2	207
NR1H2::RXRA	200
Pparg::Rxra	193
BHLHE41	193
Rxra	190
Foxa2	187
EGR1	186
GATA3	181
Gata1	180
NEUROD1	178
ELK1	176
ZNF263	169
E2F1	165
Nr1h3::Rxra	162
Arid3a	154
NFKB1	152
KLF4	145
Ar	143
OTX2	140
EGR2	139
FOS	137
Hnf4a	131
USF2	128
ETS1	127
TEAD1	125
CEBPB	125
USF1	122
EBF1	120
PBX1	120
THAP1	119
Gata4	115
Esrra	111
GATA2	110
STAT1::STAT2	105
E2F6	105
TFAP2A-var.3	105
PAX5	104
FOSL2	102
SOX9	95
ELF3	94
Tcf21	94
BHLHE40	90
NRF1	89
BATF::JUN	89
NKX3-2	88
GATA5	86
NFIA	86
Atf3	81
FOSL1	81
FLI1	81
CEBPA	81
Foxj2	79
TCF7L2	79
KLF5	78
SMAD2::SMAD3::SMAD4	78
CEBPD	77
Tcf7	77
SPI1	76
POU5F1B	75
KLF9	74
E2F3	73
REL	69
JUND	69
ETV1	68
JUN	68
Hand1::Tcf3	66
CDX2	61
PDX1	61
RELA	60
FOS::JUN	59
Arnt	58
MAFK	57
TEAD2	57
EOMES	53
ARNT::HIF1A	51
STAT1	51
Klf1	51
ETV3	49
Mafb	49
BCL6B	49
CREB1	48
ETV6	48
Foxo1	48
RARA::RXRA	46
Pou5f1::Sox2	46
HNF4G	46
ELK4	45
RUNX2	45
SP3	42
NFKB2	40
FOXP1	38
MAFF	38
SP4	38
TP63	38
GATA1::TAL1	38
HSF1	37
Atf1	37
TFDP1	36
Stat5a::Stat5b	34
ERF	33
MYB	33
Bcl6	33
SCRT1	32
HEY1	32
Vdr	32
MYBL2	30
Bach1::Mafk	30
ELK3	29
FEV	29
KLF13	28
Nfe2l2	27
NFE2	27
ZBTB18	27
NR3C2	25
Gfi1b	25
NR4A2	25
NFYB	23
NFATC3	23
Ahr::Arnt	22
ATF4	22
MAFG	22
JUNB	22
SRF	21
ZNF143	21
TBX1	21
NFIL3	21
MAF::NFE2	20
TP53	19
Hic1;	19
SNAI2	19
REST	19
MEF2B	19
Nkx3-1	18
MEF2A	17
POU2F2	17
BATF3	16
PRDM1	16
SPIB	16
FOXH1	15
FOXP3	15
NFYA	15
RXRB	13
EGR4	13
IRF1	13
ELF5	12
RXRG	12
PPARG	12
GLI2	11
Dux	10
Arntl	9
Mecom	9
TP73	9
HINFP	9
Ddit3::Cebpa	9
SP2	8
RFX5	8
NR2C2	8
SREBF1	8
GRHL1	8
DUX4	7
Gmeb1	7
NFATC1	7
Srebf1(var.2)	6
HNF1B	6
SREBF2	6
NR3C1	6
Ascl2	6
Pax6	5
RXRA::VDR	5
MEIS1	4
EGR3	4
Rarg	4
Sox17	4
RORA(var.2)	4
ETV4	4
PROX1	4
BARX1	4
Rarb	3
MEF2D	3
CREB3L1	3
RORA	3
GMEB2	3
SMAD3	2
CREB3	2
MAFG::NFE2L1	2
MIXL1	2
XBP1	2
ISX	2
HNF1A	2
RARA	2
ZBTB33	2
LEF1	2
Nr5a2	1
NFAT5	1
HSF2	1
Creb3l2	1
E2F2	1
Klf12	1
HOXA13	1
TBX19	1
IRF8	1