NAIK Genome Database

experiment name	hs_cholangiocarcinoma_HuCCT1_cancer_MED1_SRX1013331	number of peaks	40501
antibody	MED1
cell line	HUCCT1	Number of reads	43190798
sra ftp link	link	SRX search	link
homer denovo motifs	link
Genome view	link

Motif name	Number of overlap
FOS	6132
BATF::JUN	4794
FOSL2	4689
JUND	4491
FOSL1	4472
JUN	3975
FOS::JUN	3810
Atf3	3407
SP1	3115
ERG	2810
PBX1	2631
Gabpa	2459
NR2F1	2375
MYC	2368
MYCN	2332
ELF1	2314
TEAD4	2308
TEAD1	2047
Esrrg	2037
RUNX1	1962
E2F1	1925
Tcf12	1754
ZNF740	1752
NFIC	1737
TAL1::TCF3	1625
ELK1	1574
MAX	1567
E2F4	1547
CTCF	1513
STAT3	1455
ZBTB7A	1446
TCF4	1436
FOXA1	1418
ETS1	1409
EGR1	1387
TCF3	1318
GATA3	1318
JUNB	1279
Gata4	1200
TFAP2A	1199
CEBPB	1192
Esrra	1175
Sox2	1138
NFE2	1115
Foxa2	1068
ELF3	1059
TFAP2C	1043
Nfe2l2	1038
EGR2	1038
KLF5	1035
ZEB1	1013
GATA2	1003
NFKB1	993
MYBL1	992
KLF4	980
Gata1	968
MAX::MYC	955
GATA5	944
TFAP2A-var.2	939
FLI1	920
ETV1	896
RUNX3	869
NRF1	848
CEBPA	809
USF2	773
ELK4	759
REL	748
USF1	744
MAF::NFE2	731
Tcf21	722
NR1H2::RXRA	721
YY1	716
BHLHE40	693
RUNX2	687
Ar	667
ETV6	660
MAFF	655
Rxra	648
ERF	626
Pparg::Rxra	621
Hnf4a	621
SPI1	621
RELA	615
CEBPD	584
TP63	575
NFKB2	570
CREB1	569
BHLHE41	554
E2F6	553
MAFG	549
ELK3	549
SOX9	543
TFDP1	531
HEY1	530
MAFK	492
Bach1::Mafk	480
TFAP4	472
Klf1	452
ETV3	452
NFIA	434
ZNF263	427
STAT1::STAT2	421
SP3	402
PAX5	388
TFAP2A-var.3	388
EBF1	378
Atf1	378
TCF7L2	371
Foxo1	345
Foxj2	338
Arnt	334
Tcf7	324
Nr1h3::Rxra	305
SMAD2::SMAD3::SMAD4	295
BATF3	292
KLF9	287
GATA1::TAL1	284
E2F3	270
OTX2	268
Hand1::Tcf3	266
Mafb	262
SP2	261
NEUROD1	251
RARA::RXRA	248
THAP1	246
CDX2	245
NR3C2	242
SP4	241
ARNT::HIF1A	240
HSF1	233
Ahr::Arnt	211
POU5F1B	211
NKX3-2	193
NFATC3	193
HNF4G	192
NFYB	190
ETV4	189
FOXP1	187
NFYA	186
ATF4	184
Pou5f1::Sox2	181
FEV	180
XBP1	176
EGR4	174
MYBL2	166
PDX1	158
TEAD2	158
MEF2B	158
NFIL3	158
Stat5a::Stat5b	158
MYB	151
STAT1	148
HNF1B	135
PRDM1	132
SNAI2	131
Arntl	128
Ddit3::Cebpa	127
RXRB	121
Arid3a	117
RXRG	117
MEF2A	113
EOMES	112
NR4A2	111
GMEB2	110
TP53	110
TP73	105
MAFG::NFE2L1	103
NFATC1	100
Vdr	96
EGR3	95
ZNF143	95
TBX1	91
GRHL1	90
IRF1	83
BCL6B	79
Nkx3-1	79
Sox17	79
Bcl6	74
Gmeb1	71
SRF	68
ZBTB33	67
NR2C2	66
HINFP	66
Hic1;	65
Dux	63
Gfi1b	61
KLF13	61
POU2F2	54
SCRT1	53
FOXP3	53
SPIB	50
ELF5	49
SREBF2	47
Mecom	45
FOXH1	44
DUX4	41
NR3C1	41
CLOCK	39
RXRA::VDR	38
REST	38
SREBF1	37
HNF1A	37
RFX5	36
Rarg	35
CREB3L1	32
MEIS1	31
Rarb	30
FOS::JUND	28
ZBTB18	28
LEF1	27
MEF2D	26
FOS::JUNB	26
GLI2	23
PPARG	23
TBX19	18
RARA	17
Ascl2	16
BARX1	13
CREB3	13
Nr5a2	13
SMAD3	12
Srebf1(var.2)	12
HOXA13	8
MIXL1	8
Creb3l2	8
RFX2	8
Pax6	8
RORA(var.2)	8
FOXO4	7
Hes1	7
PROX1	7
FOS::JUN(var.2)	6
Rfx1	6
Arx	6
Stat4	4
Pitx1	4
Hoxa11	3
FOSB::JUN	3
NFIC::TLX1	3
Id2	3
HSF2	3
ATF7	3
NFAT5	2
RORA	2
IRF2	2
Hoxa9	2
HES5	2
DBP	2
Alx4	1
TBP	1
NKX2-3	1
E2F8	1
TFE3	1
Klf12	1
ESR1	1
HOXA5	1

Motif name

Number of overlap

6132

4794

4689

4491

4472