NAIK Genome Database

experiment name	hs_CervicalCarcinoma_HeLaS3_Cancer_RNA_SRX117809	number of peaks	149813
antibody	RNA
cell line	HELAS3	Number of reads	45183845
sra ftp link	link	SRX search	link
homer denovo motifs	link
Genome view	link

Motif name	Number of overlap
MYC	5303
MYCN	5223
MAX	4020
MAX::MYC	2702
SP1	2439
TCF4	2000
TAL1::TCF3	1884
NFIC	1849
E2F1	1753
Tcf12	1619
TCF3	1533
ERG	1485
CTCF	1379
NR2F1	1344
ZNF740	1334
Gabpa	1290
EGR1	1287
E2F4	1248
EGR2	1235
TFAP2C	1215
BHLHE41	1198
YY1	1172
ELF1	1151
NFIA	1111
NRF1	1076
ZEB1	1043
TFAP2A	1035
RUNX1	1028
Ar	1028
POU5F1B	1015
Esrrg	995
KLF4	975
ZBTB7A	954
ELK1	936
HEY1	909
FOS	897
TFAP2A-var.2	869
Esrra	839
ETS1	823
USF1	803
BHLHE40	796
USF2	772
FOXA1	728
ZNF263	726
KLF9	701
KLF5	700
MYBL1	686
JUND	663
FOSL2	640
TFDP1	616
Sox2	609
E2F6	608
STAT3	591
BATF::JUN	584
ETV1	571
FOSL1	544
PBX1	540
Arnt	500
JUN	489
FOS::JUN	480
ELK4	459
Atf3	452
TEAD4	441
NFKB1	441
Gata1	430
Foxa2	418
FLI1	413
Hnf4a	408
ARNT::HIF1A	405
Tcf21	404
CREB1	395
NEUROD1	389
ELK3	377
Klf1	368
ERF	367
CEBPB	366
RUNX3	363
TP63	357
PAX5	353
Rxra	349
SP3	349
EBF1	344
SPI1	341
TFAP4	329
Pparg::Rxra	329
TFAP2A-var.3	325
ETV3	322
Atf1	319
NR1H2::RXRA	313
SOX9	307
ETV6	301
Gata4	299
ELF3	290
TEAD1	288
E2F3	262
THAP1	262
STAT1::STAT2	261
REL	261
SMAD2::SMAD3::SMAD4	253
EGR4	248
GATA2	244
GATA3	243
CEBPA	229
NR3C2	224
NFE2	219
Hand1::Tcf3	216
Nfe2l2	209
RELA	208
GATA5	207
CEBPD	201
Pou5f1::Sox2	199
Ahr::Arnt	188
XBP1	187
JUNB	187
MAF::NFE2	184
NFKB2	184
OTX2	183
RUNX2	180
SNAI2	176
NFATC3	176
BATF3	175
MAFK	163
SP4	159
MAFF	153
Bach1::Mafk	152
Foxj2	149
Mafb	146
FEV	144
SP2	135
MYB	129
TCF7L2	122
ZNF143	120
GMEB2	120
NFYB	119
GATA1::TAL1	118
EGR3	117
MAFG	114
Hic1;	110
HINFP	108
RARA::RXRA	108
HNF4G	107
NR4A2	101
NKX3-2	100
Tcf7	99
Arntl	97
ATF4	93
Nr1h3::Rxra	92
NFYA	91
EOMES	88
Foxo1	83
REST	82
Gmeb1	82
TP53	82
HSF1	71
Tcfl5	68
FOXP1	65
STAT1	65
FOXH1	64
ETV4	62
TEAD2	61
PRDM1	61
PDX1	60
CDX2	60
Dux	59
KLF13	56
SCRT1	56
TP73	53
Bcl6	52
CREB3L1	50
NFIL3	49
MYBL2	47
Ddit3::Cebpa	47
BCL6B	47
Rarb	44
SPIB	44
RXRB	43
SREBF2	40
NR3C1	40
Stat5a::Stat5b	40
TBX1	39
RXRG	38
Gfi1b	38
Rarg	37
ZBTB33	37
SRF	37
Sox17	36
Vdr	36
RFX5	33
NFATC1	33
POU2F2	32
NR2C2	31
CLOCK	31
SREBF1	31
DUX4	29
MEF2B	28
GLI2	28
ELF5	26
FOXP3	25
MAFG::NFE2L1	25
ZBTB18	24
Nkx3-1	24
Ascl2	19
Nr5a2	18
Arid3a	18
IRF1	17
CREB3	16
Mecom	14
PROX1	12
Hes1	11
PPARG	10
TBX19	10
Creb3l2	10
Id2	10
MEF2A	10
HNF1B	10
Pax6	9
GRHL1	8
MEIS1	8
Rfx1	7
BARX1	7
RXRA::VDR	7
RFX2	7
NFIC::TLX1	7
SMAD3	6
MEF2D	5
FOS::JUND	5
HSF2	5
Klf12	4
FOS::JUNB	4
RORA	4
FOXO4	4
HOXA5	4
NKX2-3	4
RORA(var.2)	4
Pitx1	3
POU3F2	3
RARA	3
LEF1	3
Srebf1(var.2)	3
MIXL1	2
PAX3	2
Nkx2-5-var.2	2
ISX	2
DBP	2
HNF1A	2
HES5	2
FOS::JUN(var.2)	2
Hoxa11	1
MTF1	1
FOSB::JUN	1
NFAT5	1
Znf423	1
Alx4	1
IRF2	1
ATF7	1
E2F8	1
SREBF2(var.2)	1
TFE3	1

Motif name

Number of overlap

5303

5223

4020

2702

2439