NAIK Genome Database

experiment name	hs_SkinFibroblast_BJ_normal_CTCF_SRX080340	number of peaks	53312
antibody	CTCF	link to motif view if antibody and consensus motif is the same
cell line	BJ	Number of reads	18172144
sra ftp link	link	SRX search	link
homer denovo motifs	link
Genome view	link

Motif name	Number of overlap
CTCF	23327
MYC	4894
MYCN	4427
Tcf12	3613
SP1	3150
TCF4	2897
TAL1::TCF3	2459
NFIC	2420
ZEB1	2307
NR2F1	2054
TCF3	1958
ZBTB7A	1654
Sox2	1542
RUNX1	1523
MYBL1	1508
RUNX3	1489
STAT3	1448
ZNF740	1422
MAX	1391
Gabpa	1386
E2F4	1331
ELF1	1322
ERG	1281
TFAP2C	1208
TFAP2A	1150
TFAP2A-var.2	1119
Esrrg	1118
FOXA1	1096
YY1	1082
E2F1	1075
TEAD4	1038
EGR1	1005
MAX::MYC	1000
ELK1	817
TFAP4	813
NR1H2::RXRA	783
Foxa2	759
EGR2	741
Arid3a	719
FOS	712
Rxra	710
NEUROD1	709
Pparg::Rxra	690
Gata1	690
ZNF263	677
GATA3	645
BHLHE41	633
NFKB1	628
KLF4	623
TEAD1	604
Ar	586
ETS1	577
TFAP2A-var.3	572
EBF1	570
OTX2	565
CEBPB	563
USF2	555
FOSL2	530
USF1	528
Nr1h3::Rxra	525
PBX1	521
Tcf21	513
E2F6	510
NRF1	504
Hnf4a	472
BATF::JUN	462
JUND	454
Gata4	432
STAT1::STAT2	417
FOSL1	416
BHLHE40	412
Esrra	404
Atf3	401
ELF3	400
SPI1	399
GATA2	398
THAP1	396
REL	394
KLF5	378
NFIA	362
ETV1	357
PAX5	354
SOX9	352
RELA	348
JUN	336
Foxj2	330
POU5F1B	323
NKX3-2	322
FOS::JUN	317
SMAD2::SMAD3::SMAD4	313
FLI1	310
E2F3	309
CEBPA	303
CEBPD	294
TCF7L2	281
GATA5	271
NFKB2	267
ELK4	257
Tcf7	256
SP4	253
MAFK	250
KLF9	244
PDX1	238
Pou5f1::Sox2	236
CREB1	231
Hand1::Tcf3	225
SP3	224
Foxo1	223
ETV3	221
Klf1	221
Arnt	214
Mafb	206
TEAD2	206
ETV6	204
RUNX2	196
EOMES	196
TFDP1	190
HSF1	189
HEY1	189
STAT1	188
HNF4G	179
Atf1	178
ELK3	178
TP63	173
ARNT::HIF1A	171
CDX2	171
RARA::RXRA	167
BCL6B	158
ERF	153
MAFF	149
MYBL2	144
Bach1::Mafk	142
FOXP1	142
NFE2	137
MEF2B	135
GATA1::TAL1	132
Nfe2l2	131
MYB	130
MAF::NFE2	128
Bcl6	126
MEF2A	120
Vdr	119
KLF13	119
Stat5a::Stat5b	117
JUNB	116
TP53	113
Gfi1b	103
MAFG	101
NFATC3	101
SP2	100
SCRT1	99
PRDM1	97
Ahr::Arnt	96
BATF3	95
ZNF143	93
SRF	92
EGR4	91
SNAI2	91
NFYB	89
FEV	89
Nkx3-1	87
NR3C2	83
ZBTB18	82
IRF1	82
NFYA	74
NR4A2	73
ATF4	73
NFIL3	71
Hic1;	69
POU2F2	69
REST	68
HINFP	66
TBX1	66
FOXP3	64
FOXH1	60
XBP1	52
PPARG	51
EGR3	46
ELF5	45
RFX5	44
SPIB	43
Ddit3::Cebpa	43
RXRB	42
Dux	39
RXRG	38
NFATC1	36
SREBF2	35
NR3C1	33
Arntl	30
DUX4	29
HNF1B	29
Ascl2	27
TP73	27
Sox17	26
GRHL1	25
Gmeb1	25
NR2C2	24
GLI2	22
ZBTB33	21
RXRA::VDR	20
GMEB2	19
SREBF1	18
Srebf1(var.2)	18
CREB3L1	16
Mecom	15
MEIS1	15
ETV4	15
Rarb	14
MAFG::NFE2L1	14
MEF2D	14
Rarg	14
TBX19	12
Nr5a2	9
PROX1	9
Pax6	8
CLOCK	8
LEF1	8
RORA(var.2)	7
RARA	7
Creb3l2	6
Hes1	6
SMAD3	5
CREB3	5
HNF1A	4
Pitx1	4
Rfx1	3
MIXL1	3
Hoxa9	3
HOXA13	3
RFX2	3
BARX1	3
Alx4	2
FOS::JUND	2
Sox1	2
HES5	2
NFIC::TLX1	2
TFE3	2
RORA	2
DBP	1
E2F2	1
HSF2	1
Arx	1
E2F8	1
Klf12	1
NKX2-3	1
IRF9	1
PAX3	1
HOXB13	1
NKX2-8	1

Motif name

Number of overlap

23327

4894

4427

3613

3150