NAIK Genome Database

experiment name	hs_retina_retina_undef_CTCF_SRX2166892	number of peaks	23252
antibody	CTCF	link to motif view if antibody and consensus motif is the same
cell line	RETINA	Number of reads	14953942
sra ftp link	link	SRX search	link
homer denovo motifs	link
Genome view	link

Motif name	Number of overlap
CTCF	10763
MYC	2931
MYCN	2724
Tcf12	2208
SP1	2139
TCF4	1849
ZEB1	1595
TAL1::TCF3	1543
NFIC	1461
TCF3	1236
NR2F1	1086
ZBTB7A	1006
E2F4	996
ZNF740	982
E2F1	926
MYBL1	853
TFAP2A-var.2	816
RUNX3	764
EGR1	743
RUNX1	727
STAT3	727
TFAP2C	716
Gabpa	715
Sox2	708
TFAP2A	697
MAX	655
ERG	646
ELF1	621
EGR2	602
Esrrg	600
ELK1	547
YY1	516
MAX::MYC	504
NR1H2::RXRA	467
TFAP4	428
BHLHE41	425
NRF1	421
TFAP2A-var.3	417
NEUROD1	403
ZNF263	403
Pparg::Rxra	394
TEAD4	386
Rxra	366
FOXA1	357
NFKB1	354
E2F6	351
THAP1	341
KLF4	334
Nr1h3::Rxra	328
ETS1	306
EBF1	294
KLF5	269
Gata1	266
Ar	266
BHLHE40	266
USF2	265
E2F3	258
GATA3	256
Foxa2	255
USF1	246
OTX2	245
TEAD1	242
ETV1	240
STAT1::STAT2	234
Tcf21	232
PAX5	228
SOX9	227
Arid3a	223
SP4	216
Esrra	212
Hnf4a	209
NFIA	206
CEBPB	198
SMAD2::SMAD3::SMAD4	197
REL	195
PBX1	194
FOS	193
SP3	182
GATA2	179
Gata4	175
RELA	169
Klf1	165
FLI1	161
KLF9	159
ELF3	156
FOSL2	156
Arnt	153
NFKB2	149
ELK4	148
Foxj2	147
POU5F1B	147
ETV3	147
Atf3	145
NKX3-2	143
SPI1	141
BATF::JUN	140
CEBPD	139
TCF7L2	137
PDX1	133
FOSL1	129
ELK3	127
Hand1::Tcf3	124
TFDP1	121
GATA5	120
ARNT::HIF1A	118
Tcf7	116
CREB1	115
CEBPA	114
HEY1	111
JUND	111
ETV6	108
STAT1	107
RARA::RXRA	106
RUNX2	106
JUN	105
TEAD2	104
Atf1	98
Pou5f1::Sox2	97
SNAI2	97
KLF13	94
HNF4G	91
MAFK	90
HSF1	90
MYB	89
Foxo1	88
ERF	87
EGR4	85
FOS::JUN	84
SP2	83
Mafb	83
EOMES	82
TP63	82
BCL6B	77
CDX2	73
NFATC3	72
FOXP1	72
MYBL2	68
Vdr	68
Ahr::Arnt	67
TP53	65
Bach1::Mafk	60
MAFF	60
Stat5a::Stat5b	58
Bcl6	58
NFE2	57
ZBTB18	54
Nfe2l2	51
BATF3	50
HINFP	49
MEF2B	48
MAF::NFE2	48
Gfi1b	48
GATA1::TAL1	48
FEV	47
EGR3	45
SCRT1	45
NFYB	44
ZNF143	44
Hic1;	43
NFYA	40
MAFG	40
Nkx3-1	39
NR4A2	39
PPARG	37
NR3C2	37
REST	37
SRF	36
MEF2A	35
TBX1	34
FOXP3	34
JUNB	34
NFIL3	34
PRDM1	31
FOXH1	30
POU2F2	29
IRF1	28
XBP1	28
ATF4	27
ELF5	24
SPIB	22
NFATC1	21
SREBF2	21
Ddit3::Cebpa	20
Ascl2	20
Arntl	20
RFX5	18
NR3C1	18
RXRB	18
GLI2	17
Sox17	17
Dux	15
DUX4	15
RXRG	15
NR2C2	13
SREBF1	13
GRHL1	13
Gmeb1	13
Rarb	12
ZBTB33	11
Rarg	11
TP73	10
ETV4	10
MEIS1	10
Mecom	10
RXRA::VDR	9
GMEB2	8
LEF1	7
CREB3L1	7
Srebf1(var.2)	7
CLOCK	7
RORA(var.2)	6
Pax6	6
PROX1	6
RARA	5
HNF1B	5
Nr5a2	5
MIXL1	4
RORA	4
MEF2D	4
CREB3	3
Hes1	2
HOXA13	2
Pitx1	2
Creb3l2	2
Nkx2-5-var.2	1
TBX19	1
SMAD3	1
HNF1A	1
TFE3	1
HSF2	1
NKX2-8	1
RFX2	1
FOS::JUND	1
Rfx1	1
NKX2-3	1
HES5	1
MAFG::NFE2L1	1
Hoxa9	1
NFIC::TLX1	1

Motif name

Number of overlap

10763

2931

2724

2208

2139