NAIK Genome Database

experiment name	hs_retina_retina_undef_CTCF_SRX2166890	number of peaks	31533
antibody	CTCF	link to motif view if antibody and consensus motif is the same
cell line	RETINA	Number of reads	27907940
sra ftp link	link	SRX search	link
homer denovo motifs	link
Genome view	link

Motif name	Number of overlap
CTCF	10984
MYC	2702
MYCN	2408
Tcf12	2017
SP1	1717
TCF4	1622
TAL1::TCF3	1323
NFIC	1320
ZEB1	1320
NR2F1	1051
TCF3	1050
MYBL1	841
ZBTB7A	819
Sox2	793
RUNX3	751
RUNX1	709
ZNF740	704
E2F4	685
STAT3	683
TFAP2A-var.2	681
Gabpa	666
MAX	652
TFAP2C	622
TFAP2A	599
ELF1	589
ERG	588
E2F1	586
Esrrg	542
EGR1	531
YY1	519
MAX::MYC	500
FOXA1	454
NR1H2::RXRA	418
TFAP4	401
NEUROD1	396
TEAD4	395
BHLHE41	394
ELK1	390
EGR2	385
ZNF263	356
Rxra	354
Pparg::Rxra	334
Foxa2	313
Gata1	312
KLF4	302
TFAP2A-var.3	298
NFKB1	298
EBF1	294
Nr1h3::Rxra	286
NRF1	282
GATA3	277
USF2	269
Arid3a	269
E2F6	254
OTX2	254
THAP1	253
USF1	251
ETS1	248
FOS	240
TEAD1	239
Ar	235
PBX1	229
BHLHE40	221
CEBPB	219
Hnf4a	206
Tcf21	205
Gata4	200
PAX5	197
GATA2	194
STAT1::STAT2	192
Esrra	190
KLF5	181
SOX9	177
FOSL2	171
NFIA	167
E2F3	166
SMAD2::SMAD3::SMAD4	162
ELF3	157
NKX3-2	157
BATF::JUN	156
REL	156
SPI1	156
Atf3	155
Foxj2	148
CEBPD	144
FLI1	144
SP4	143
ETV1	142
RELA	135
POU5F1B	134
JUND	133
Arnt	132
FOSL1	131
CEBPA	127
TCF7L2	126
PDX1	126
GATA5	126
NFKB2	125
ETV3	115
MAFK	114
Pou5f1::Sox2	113
Tcf7	110
ELK4	109
JUN	108
KLF9	107
ARNT::HIF1A	106
EOMES	106
CREB1	105
Hand1::Tcf3	101
Mafb	98
FOS::JUN	97
STAT1	95
SP3	95
Klf1	94
Foxo1	91
RARA::RXRA	90
RUNX2	87
TEAD2	86
CDX2	86
BCL6B	84
HSF1	83
TP63	81
SNAI2	79
Atf1	78
HNF4G	78
ETV6	77
HEY1	75
MAFF	70
MYBL2	68
Bach1::Mafk	68
ELK3	67
FOXP1	66
ERF	65
Vdr	65
KLF13	65
MYB	62
TFDP1	61
Bcl6	61
NFATC3	60
EGR4	59
TP53	58
GATA1::TAL1	56
Ahr::Arnt	51
Stat5a::Stat5b	50
NFE2	50
SP2	48
Gfi1b	48
Nfe2l2	48
SCRT1	48
SRF	47
MEF2B	47
MEF2A	46
BATF3	46
ZNF143	45
MAFG	45
MAF::NFE2	44
REST	44
FEV	38
Nkx3-1	38
ZBTB18	37
ATF4	37
HINFP	37
POU2F2	35
NR4A2	34
PRDM1	33
Hic1;	33
NFYB	33
NFYA	33
NFIL3	32
JUNB	32
TBX1	29
NR3C2	28
EGR3	27
FOXP3	27
PPARG	27
IRF1	24
RXRB	23
Dux	22
FOXH1	22
Ddit3::Cebpa	22
RXRG	20
SPIB	19
RFX5	18
ELF5	18
Arntl	17
SREBF2	17
XBP1	17
DUX4	16
NFATC1	16
NR3C1	14
NR2C2	14
Ascl2	14
Sox17	13
GRHL1	13
GLI2	10
TP73	10
SREBF1	9
Rarb	9
HNF1B	9
Mecom	8
MEIS1	8
RXRA::VDR	8
Srebf1(var.2)	8
CREB3L1	6
PROX1	6
Pax6	6
Rarg	6
GMEB2	6
ZBTB33	6
Gmeb1	5
RARA	5
Nr5a2	5
CLOCK	5
ETV4	5
MAFG::NFE2L1	5
LEF1	5
MEF2D	4
TBX19	4
Hoxa9	3
RORA	3
MIXL1	3
SMAD3	2
TFE3	2
BARX1	2
HNF1A	2
RORA(var.2)	2
Pitx1	1
NKX2-8	1
Alx4	1
FOS::JUND	1
RFX2	1
DBP	1
Hes1	1
CREB3	1
POU3F2	1

Motif name

Number of overlap

10984

2702

2408

2017

1717