NAIK Genome Database

experiment name	hs_ProstateCancer_VCaP_cancer_HDAC3_SRX059714	number of peaks	18863
antibody	HDAC3
cell line	VCAP	Number of reads	24817392
sra ftp link	link	SRX search	link
homer denovo motifs	link
Genome view	link

Motif name	Number of overlap
Ar	5643
FOXA1	5183
Foxa2	3184
ERG	2178
Esrrg	2106
NR3C2	1117
Gabpa	1070
NKX3-2	1005
Nkx3-1	962
GATA3	849
NR2F1	759
Gata4	549
Esrra	504
NFIC	482
ELF1	481
Sox2	478
GATA5	424
GATA2	416
MYC	396
Gata1	384
MAX	384
SP1	382
CDX2	374
Tcf12	372
MYBL2	349
MYCN	339
ERF	339
Hnf4a	334
TAL1::TCF3	306
FOS	283
ELF3	280
Foxo1	278
EGR2	275
TEAD4	271
ZBTB7A	265
STAT3	264
Foxj2	257
TFAP2C	254
TFAP2A	246
ETS1	246
BHLHE41	244
TCF4	238
TCF3	233
TEAD1	233
NR3C1	216
E2F1	213
ZNF740	212
CEBPB	201
NR1H2::RXRA	201
SPI1	199
ZEB1	195
RUNX1	194
FOSL2	193
EGR1	184
TCF7L2	183
Rxra	182
Tcf7	179
FLI1	178
MAX::MYC	173
PBX1	172
MYBL1	172
ETV1	171
BATF::JUN	168
TP63	167
Pparg::Rxra	166
ELK1	164
NFIA	164
TFAP2A-var.2	163
SOX9	155
KLF4	148
FOXP1	144
CEBPA	134
E2F4	128
JUND	128
FOSL1	126
CTCF	125
GATA1::TAL1	122
USF1	117
JUN	114
KLF5	113
Arnt	109
Atf3	108
NFKB1	107
EBF1	105
Mafb	103
POU5F1B	100
ARNT::HIF1A	96
HNF4G	96
GRHL1	95
USF2	92
NEUROD1	90
REL	87
RELA	87
OTX2	87
ETV3	87
FOS::JUN	86
HEY1	84
BHLHE40	83
ZNF263	82
MAFK	82
Nr1h3::Rxra	79
YY1	78
NRF1	78
PDX1	77
ETV6	76
Tcf21	73
ELK4	72
STAT1::STAT2	70
TFAP2A-var.3	70
CEBPD	69
MEF2B	68
Arid3a	67
RUNX3	67
SMAD2::SMAD3::SMAD4	64
TFAP4	62
E2F6	62
HNF1B	61
CREB1	59
Klf1	59
RARA::RXRA	59
NFKB2	56
Ahr::Arnt	54
ETV4	51
ELK3	50
Pou5f1::Sox2	50
NFIL3	50
BCL6B	50
TFDP1	50
MAFF	49
SP3	49
EGR4	48
PAX5	47
FEV	47
HSF1	45
Hand1::Tcf3	45
Stat5a::Stat5b	42
KLF9	41
Bcl6	39
NFE2	38
Dux	35
Vdr	35
EOMES	35
RUNX2	35
Mecom	34
Nfe2l2	34
MAF::NFE2	32
TP73	29
ATF4	29
NFATC3	28
MEF2A	27
DUX4	27
MAFG	26
SPIB	26
TP53	25
Atf1	24
JUNB	24
Gfi1b	24
BATF3	23
STAT1	23
PRDM1	23
THAP1	22
Sox17	21
ELF5	21
RXRB	21
SRF	20
TEAD2	19
NR4A2	19
RXRG	19
MYB	19
SNAI2	19
FOXP3	18
Ddit3::Cebpa	18
HNF1A	17
E2F3	16
TBX1	16
NFATC1	16
RXRA::VDR	15
POU2F2	14
FOXH1	14
XBP1	14
Bach1::Mafk	14
SCRT1	14
MEF2D	13
RFX5	13
IRF1	12
SP2	12
Hic1;	12
HOXA13	12
ZNF143	11
TBX19	11
Nr5a2	11
EGR3	11
NFYB	11
Pax6	10
NFYA	10
NR2C2	9
REST	9
Ascl2	8
SP4	8
SREBF1	8
Gmeb1	8
RORA(var.2)	7
HINFP	7
MEIS1	6
BARX1	6
CREB3L1	6
FOXO4	5
Srebf1(var.2)	5
GMEB2	5
SMAD3	4
Arx	4
ZBTB18	4
KLF13	4
PPARG	3
HSF2	3
ZBTB33	3
LEF1	3
RORA	3
Rarg	3
CLOCK	2
SREBF2	2
Hoxa9	2
MAFG::NFE2L1	2
HOXA5	2
CREB3	2
Arntl	2
Rfx1	2
Stat4	1
NFAT5	1
Id2	1
FOS::JUN(var.2)	1
Rarb	1
Alx4	1
NKX2-3	1
Pitx1	1
NFIC::TLX1	1
Hes1	1
FOS::JUNB	1
Sox1	1
TFE3	1
HOXB13	1
Tcfl5	1
Klf12	1

Motif name

Number of overlap

5643

5183

3184

2178

2106