NAIK Genome Database

experiment name	hs_neuroblastoma_SKNSH_cancer_RAD21_SRX1529432	number of peaks	20360
antibody	RAD21
cell line	SKNSH	Number of reads	22101744
sra ftp link	link	SRX search	link
homer denovo motifs	link
Genome view	link

Motif name	Number of overlap
CTCF	8664
MYC	2441
MYCN	2137
Tcf12	1901
SP1	1699
TCF4	1511
ZEB1	1343
NFIC	1302
TAL1::TCF3	1302
TCF3	1054
NR2F1	956
MYBL1	776
ZNF740	775
E2F4	766
ZBTB7A	734
Sox2	663
E2F1	663
RUNX1	648
STAT3	618
RUNX3	616
TFAP2A-var.2	589
TFAP2A	581
TFAP2C	571
Gabpa	553
ERG	539
MAX	534
Esrrg	510
EGR1	507
YY1	492
ELF1	477
EGR2	450
NR1H2::RXRA	429
MAX::MYC	427
FOXA1	408
BHLHE41	399
ELK1	374
NEUROD1	366
Pparg::Rxra	359
TFAP4	351
TEAD4	349
Rxra	344
Nr1h3::Rxra	314
NFKB1	304
ZNF263	294
Foxa2	278
TFAP2A-var.3	275
NRF1	275
Gata1	274
KLF4	268
GATA3	268
THAP1	268
Ar	264
Tcf21	251
EBF1	251
E2F6	249
OTX2	236
Arid3a	234
FOS	229
KLF5	225
PBX1	220
USF2	219
Hnf4a	218
TEAD1	218
PAX5	217
E2F3	212
CEBPB	209
USF1	203
ETS1	198
STAT1::STAT2	196
SOX9	196
BHLHE40	193
Esrra	188
GATA2	185
SMAD2::SMAD3::SMAD4	179
REL	178
Gata4	172
NFIA	167
RELA	167
FOSL2	166
ETV1	161
BATF::JUN	159
Foxj2	152
Atf3	142
NKX3-2	141
FOSL1	140
ELF3	140
CEBPD	140
JUND	137
KLF9	137
FLI1	137
TCF7L2	137
SP3	136
POU5F1B	134
Klf1	130
SPI1	129
SP4	128
NFKB2	125
JUN	124
GATA5	124
Hand1::Tcf3	122
CEBPA	116
Tcf7	115
Foxo1	107
PDX1	104
FOS::JUN	103
CREB1	102
ETV6	102
Pou5f1::Sox2	100
Arnt	98
MAFK	96
RARA::RXRA	95
STAT1	95
RUNX2	95
HSF1	89
ELK4	89
HNF4G	89
TEAD2	88
ETV3	83
EOMES	82
MYB	81
Mafb	80
TP63	78
ARNT::HIF1A	76
TFDP1	76
Atf1	73
HEY1	73
Vdr	71
CDX2	71
EGR4	70
FOXP1	70
BCL6B	70
KLF13	68
MYBL2	65
Bach1::Mafk	65
ELK3	62
MAFF	61
SNAI2	60
TP53	56
Ahr::Arnt	54
Bcl6	54
NFE2	54
MEF2B	54
ERF	54
Gfi1b	52
NFATC3	50
Stat5a::Stat5b	49
NR3C2	48
MAF::NFE2	48
GATA1::TAL1	48
MEF2A	47
ZBTB18	47
SP2	44
Nfe2l2	43
SCRT1	42
SRF	39
JUNB	39
Hic1;	37
BATF3	37
PPARG	37
NFYA	36
FEV	36
POU2F2	36
PRDM1	35
FOXH1	35
EGR3	34
IRF1	34
Nkx3-1	34
ATF4	33
MAFG	33
TBX1	33
NR4A2	33
ZNF143	33
NFYB	32
HINFP	30
REST	28
NFIL3	27
FOXP3	27
RFX5	23
Ddit3::Cebpa	22
ELF5	20
SREBF1	19
NFATC1	19
RXRB	19
SPIB	19
RXRG	19
SREBF2	17
Dux	17
XBP1	17
GLI2	15
Arntl	15
Rarg	14
NR2C2	14
DUX4	13
NR3C1	12
TP73	12
Mecom	11
HNF1B	11
GRHL1	11
RXRA::VDR	10
Rarb	10
Sox17	9
Ascl2	9
Gmeb1	8
RARA	8
MEF2D	8
MEIS1	7
Srebf1(var.2)	7
CLOCK	5
TBX19	5
PROX1	5
ETV4	5
Pax6	5
MAFG::NFE2L1	4
ZBTB33	4
RORA(var.2)	4
GMEB2	4
Hoxa9	3
Nr5a2	3
SMAD3	3
LEF1	3
CREB3L1	2
RFX2	2
MIXL1	2
RORA	2
FOS::JUND	1
Id2	1
CREB3	1
E2F8	1
Arx	1
Rfx1	1
PAX3	1
HSF2	1
FOS::JUN(var.2)	1
NKX2-8	1
HNF1A	1
BARX1	1
TFE3	1
Alx4	1
Hes1	1
HOXB13	1
Pitx1	1
HES5	1

Motif name

Number of overlap

8664

2441

2137

1901

1699