NAIK Genome Database

experiment name	hs_HepatocellularCarcinoma_HepG2_cancer_CTCF_SRX080346	number of peaks	49073
antibody	CTCF	link to motif view if antibody and consensus motif is the same
cell line	HEPG2	Number of reads	13693183
sra ftp link	link	SRX search	link
homer denovo motifs	link
Genome view	link

Motif name	Number of overlap
CTCF	13472
MYC	3325
MYCN	2930
Tcf12	2413
SP1	2183
TCF4	2045
ZEB1	1827
TAL1::TCF3	1634
NFIC	1610
NR2F1	1327
TCF3	1322
ZBTB7A	1176
ZNF740	939
E2F4	930
MYBL1	896
RUNX3	892
Sox2	836
RUNX1	835
STAT3	810
Gabpa	803
MAX	779
TFAP2C	774
ELF1	735
TFAP2A-var.2	712
E2F1	711
ERG	679
TFAP2A	666
EGR1	637
Esrrg	598
MAX::MYC	592
NR1H2::RXRA	566
YY1	563
TEAD4	535
FOXA1	535
EGR2	522
ELK1	522
TFAP4	473
Rxra	462
NEUROD1	454
Pparg::Rxra	440
BHLHE41	432
Foxa2	397
Nr1h3::Rxra	389
TFAP2A-var.3	375
NFKB1	363
ZNF263	362
Gata1	357
KLF4	341
USF2	336
NRF1	336
Hnf4a	335
E2F6	334
GATA3	330
ETS1	326
EBF1	313
Arid3a	311
USF1	309
OTX2	301
Ar	300
TEAD1	294
THAP1	291
FOS	277
BHLHE40	275
CEBPB	249
PAX5	243
Esrra	239
NFIA	239
E2F3	238
KLF5	236
STAT1::STAT2	232
ETV1	224
PBX1	224
Gata4	223
Tcf21	223
FOSL2	218
SMAD2::SMAD3::SMAD4	216
SOX9	216
GATA2	197
Atf3	196
BATF::JUN	192
SPI1	188
REL	188
SP4	187
CEBPD	187
ELF3	181
Foxj2	175
JUND	173
TCF7L2	171
NKX3-2	171
CEBPA	170
FOSL1	169
RELA	165
CREB1	155
JUN	152
HNF4G	151
Tcf7	151
POU5F1B	150
GATA5	146
ELK4	146
FLI1	145
ETV3	138
NFKB2	135
Klf1	135
Arnt	133
KLF9	132
SP3	128
EOMES	124
Hand1::Tcf3	122
RARA::RXRA	120
FOS::JUN	120
Pou5f1::Sox2	119
Atf1	117
TEAD2	117
ETV6	116
MAFK	115
ARNT::HIF1A	115
PDX1	110
STAT1	109
HEY1	107
MYBL2	105
RUNX2	105
Foxo1	102
Mafb	99
HSF1	96
TFDP1	95
ELK3	94
TP63	94
KLF13	92
CDX2	92
FOXP1	89
BCL6B	87
Vdr	85
ERF	85
MYB	80
MAFF	75
NFATC3	72
Bach1::Mafk	72
Bcl6	71
SP2	71
SNAI2	69
GATA1::TAL1	68
TP53	67
SCRT1	66
NFE2	65
ZBTB18	64
Stat5a::Stat5b	64
MEF2B	62
Nfe2l2	61
BATF3	60
MEF2A	60
Gfi1b	58
NR3C2	57
ZNF143	55
MAF::NFE2	54
EGR4	54
Ahr::Arnt	52
FEV	51
Nkx3-1	49
REST	48
JUNB	46
HINFP	44
PRDM1	43
MAFG	43
FOXP3	43
NR4A2	43
SRF	43
TBX1	43
NFIL3	42
Hic1;	40
NFYA	40
NFYB	39
ATF4	38
IRF1	33
FOXH1	33
SPIB	31
PPARG	30
ELF5	30
XBP1	28
POU2F2	27
RXRB	26
EGR3	25
RXRG	25
Dux	24
NFATC1	22
NR2C2	20
Ddit3::Cebpa	20
NR3C1	19
SREBF2	18
Arntl	17
RFX5	17
RXRA::VDR	16
GLI2	16
DUX4	16
Ascl2	15
HNF1B	15
Rarg	14
SREBF1	14
GRHL1	13
Sox17	13
TP73	13
Gmeb1	13
Pax6	11
Rarb	11
ZBTB33	9
Srebf1(var.2)	9
TBX19	8
ETV4	8
MEIS1	8
LEF1	8
Mecom	7
MEF2D	7
Nr5a2	7
CLOCK	7
CREB3L1	6
PROX1	6
RARA	5
MIXL1	4
Creb3l2	3
Hes1	3
RORA(var.2)	3
NFIC::TLX1	3
FOS::JUND	3
HNF1A	2
MAFG::NFE2L1	2
GMEB2	2
CREB3	2
Pitx1	1
Rfx1	1
E2F8	1
Sox1	1
IRF2	1
Alx4	1
BARX1	1
RFX2	1
FOS::JUNB	1
DBP	1
SMAD3	1
TFE3	1
E2F2	1
RORA	1

Motif name

Number of overlap

13472

3325

2930

2413

2183