NAIK Genome Database

experiment name	hs_HepatocellularCarcin_HepG2_Cancer_CTCF_SRX1035082	number of peaks	13149
antibody	CTCF	link to motif view if antibody and consensus motif is the same
cell line	HEPG2	Number of reads	4227646
sra ftp link	link	SRX search	link
homer denovo motifs	link
Genome view	link

Overlapping motifs:

Motif name	Number of overlap
CTCF	2435
MYC	706
MYCN	671
SP1	585
Tcf12	530
TCF4	485
ZEB1	446
TAL1::TCF3	393
NFIC	335
TCF3	302
E2F4	295
ZBTB7A	265
E2F1	261
NR2F1	260
ZNF740	237
TFAP2C	217
TFAP2A-var.2	213
TFAP2A	204
EGR1	191
MYBL1	182
EGR2	178
RUNX3	159
RUNX1	156
Gabpa	156
MAX	151
ELK1	151
STAT3	151
ERG	148
ELF1	142
Sox2	141
MAX::MYC	140
Esrrg	125
TFAP2A-var.3	122
NR1H2::RXRA	117
TFAP4	117
NRF1	110
BHLHE41	105
ZNF263	96
YY1	93
NEUROD1	92
Rxra	92
Nr1h3::Rxra	91
E2F6	91
Pparg::Rxra	91
THAP1	89
E2F3	88
KLF5	79
USF2	78
TEAD4	76
NFIA	75
KLF4	75
ETS1	74
Tcf21	72
FOXA1	66
Ar	62
USF1	62
BHLHE40	61
EBF1	61
PAX5	60
NFKB1	60
ETV1	59
Foxa2	56
SP4	54
OTX2	54
Gata1	53
SOX9	52
Klf1	50
Hnf4a	50
TEAD1	49
Esrra	49
GATA3	48
SP3	47
STAT1::STAT2	47
ELK4	46
REL	45
SMAD2::SMAD3::SMAD4	45
Gata4	45
FOS	44
RELA	41
FLI1	41
PBX1	39
Hand1::Tcf3	37
GATA2	36
NFKB2	32
KLF9	32
GATA5	32
ETV6	31
KLF13	31
FOSL2	30
RUNX2	30
NKX3-2	30
CEBPD	29
BATF::JUN	29
Arnt	29
SP2	29
FOSL1	28
Arid3a	28
CEBPB	28
ETV3	28
CREB1	27
POU5F1B	27
ELK3	27
SPI1	27
CEBPA	26
TEAD2	26
ELF3	25
NFATC3	25
HEY1	25
JUND	24
SNAI2	24
ERF	24
Atf3	24
RARA::RXRA	22
STAT1	22
JUN	22
ARNT::HIF1A	21
Atf1	21
Foxj2	21
TFDP1	21
HSF1	20
MYB	20
Pou5f1::Sox2	20
HNF4G	19
Mafb	19
PDX1	19
EGR4	18
Foxo1	18
EOMES	18
TP63	17
BCL6B	16
Stat5a::Stat5b	16
ZBTB18	15
CDX2	14
SCRT1	14
MAFK	14
HINFP	14
TCF7L2	14
MYBL2	14
Nfe2l2	13
FOS::JUN	13
NFYA	13
FOXP1	13
Bach1::Mafk	13
Bcl6	12
NR4A2	12
MAF::NFE2	12
Tcf7	11
BATF3	11
NFE2	11
NFYB	11
Hic1;	11
GATA1::TAL1	11
FEV	11
MAFF	11
TP53	10
Gfi1b	10
Vdr	10
EGR3	10
ATF4	10
NR3C2	9
Ahr::Arnt	9
XBP1	9
Nkx3-1	9
ELF5	9
MAFG	8
SREBF2	8
MEF2A	8
NFIL3	8
Arntl	8
TBX1	8
PPARG	8
SPIB	7
REST	7
MEF2B	7
Ascl2	7
ZNF143	7
GLI2	7
RXRB	6
PRDM1	6
FOXP3	6
Rarb	6
RXRG	6
SRF	6
Rarg	6
NR3C1	6
Ddit3::Cebpa	5
SREBF1	4
IRF1	4
JUNB	4
RXRA::VDR	4
FOXH1	4
TP73	4
ETV4	3
NFATC1	3
DUX4	3
ZBTB33	3
CREB3L1	3
GRHL1	3
MEIS1	2
GMEB2	2
Hes1	2
Nr5a2	2
CLOCK	2
RFX5	2
Dux	2
RARA	2
PROX1	2
Creb3l2	2
Sox17	2
Pax6	1
TBX19	1
Gmeb1	1
SMAD3	1
POU2F2	1
FOS::JUND	1
Mecom	1