NAIK Genome Database

experiment name	hs_foreskinfibroblastce_BJELM_undef_RNAPOLII_SRX1184137	number of peaks	19830
antibody	RNAPOLII
cell line	BJELM	Number of reads	72019441
sra ftp link	link	SRX search	link
homer denovo motifs	link
Genome view	link

Motif name	Number of overlap
E2F1	1124
MYCN	821
YY1	778
SP1	763
MYC	749
HEY1	741
TAL1::TCF3	685
E2F4	630
ZNF740	611
TFAP2A-var.2	602
ZBTB7A	579
ERG	563
Tcf12	560
TCF4	549
TCF3	535
NR2F1	525
EGR1	514
TFAP2A	501
ELF1	494
ZEB1	491
MYBL1	464
Esrrg	459
Gabpa	450
TFAP2C	405
MAX	401
EGR2	384
NFIC	373
ELK1	361
NRF1	350
E2F6	340
ETS1	337
STAT3	333
MAX::MYC	297
TFDP1	290
TFAP2A-var.3	276
Sox2	274
RUNX1	258
ZNF263	250
ETV1	244
BHLHE40	238
BHLHE41	237
CTCF	235
NFKB1	217
RUNX3	199
Esrra	183
REL	182
EBF1	170
FOS	168
KLF4	167
ELK4	166
Tcf21	165
Rxra	156
PBX1	155
RELA	154
Ar	153
FLI1	152
FOXA1	149
Pparg::Rxra	143
ELK3	141
STAT1::STAT2	140
USF2	140
NEUROD1	139
Klf1	139
TEAD4	134
BATF::JUN	133
Gata1	132
NFKB2	125
SMAD2::SMAD3::SMAD4	124
FOSL2	124
ETV6	124
ELF3	123
NR1H2::RXRA	123
Hand1::Tcf3	123
GATA3	122
Hnf4a	119
JUND	114
E2F3	113
THAP1	112
USF1	112
SP3	111
KLF5	111
ETV3	108
FEV	107
TEAD1	107
JUN	104
KLF9	103
ERF	102
NFATC3	102
SOX9	101
GATA2	100
FOSL1	99
OTX2	97
Arnt	96
SNAI2	94
Foxa2	93
SPI1	93
TFAP4	91
PAX5	90
FOS::JUN	88
Gata4	86
ARNT::HIF1A	82
NFIA	81
Atf3	77
NR3C2	76
HSF1	74
EGR4	72
RUNX2	65
GATA5	65
CEBPB	61
Ahr::Arnt	61
TCF7L2	58
TP63	58
Stat5a::Stat5b	55
HINFP	53
POU5F1B	52
NR4A2	51
CEBPD	51
Tcf7	51
Foxo1	50
Foxj2	50
STAT1	50
GATA1::TAL1	48
CEBPA	47
HNF4G	46
CREB1	45
Gmeb1	40
MYB	38
Mafb	38
BCL6B	37
Atf1	37
RARA::RXRA	36
Hic1;	35
NFE2	35
SP2	35
Gfi1b	35
Nr1h3::Rxra	34
IRF1	33
EGR3	33
PRDM1	33
Bcl6	33
MAFK	33
XBP1	32
Nfe2l2	32
NKX3-2	31
MEF2B	31
MAF::NFE2	30
ZNF143	29
GMEB2	28
SPIB	27
FOXP1	26
PDX1	26
TEAD2	25
SP4	25
MAFF	25
Bach1::Mafk	25
JUNB	24
KLF13	24
SCRT1	24
CREB3L1	23
Arntl	22
Arid3a	22
MEF2A	22
RXRB	21
MAFG	21
RXRG	21
Vdr	20
ETV4	19
TP53	19
Pou5f1::Sox2	18
REST	18
FOXH1	18
CDX2	17
NFATC1	17
GLI2	17
NFYB	16
EOMES	16
MYBL2	14
ZBTB33	13
ATF4	13
Rarg	13
SREBF1	12
NR2C2	12
NR3C1	11
Rarb	11
FOXP3	11
Sox17	11
Dux	11
SREBF2	10
SRF	10
ZBTB18	10
NFIL3	10
BATF3	10
TBX1	9
CLOCK	9
GRHL1	9
MEF2D	8
TP73	8
DUX4	8
Mecom	8
NFYA	8
Nkx3-1	7
Ddit3::Cebpa	7
LEF1	6
ELF5	6
PPARG	6
PROX1	6
Ascl2	6
HNF1B	4
Creb3l2	4
HOXA5	4
Pitx1	4
BARX1	3
RORA	3
Nr5a2	3
Hes1	3
HSF2	3
HOXA13	2
RFX5	2
CREB3	2
Pax6	2
Id2	2
RORA(var.2)	2
TBX19	2
RXRA::VDR	2
MAFG::NFE2L1	2
POU2F2	2
MEIS1	2
E2F8	2
SMAD3	2
Hoxa11	1
FOS::JUN(var.2)	1
FOS::JUNB	1
SREBF2(var.2)	1
RARA	1
Srebf1(var.2)	1
Stat4	1
NFIC::TLX1	1
Nkx2-5-var.2	1
MIXL1	1
FOSB::JUN	1
FOS::JUND	1
NFAT5	1
Alx4	1

Motif name

Number of overlap

1124

821

778

763

749