NAIK Genome Database

experiment name	hs_EmbryonicStemCell_BGO3_normal_SMAD3_SRX130090	number of peaks	10778
antibody	SMAD3	link to motif view if antibody and consensus motif is the same
cell line	BGO3	Number of reads	8204353
sra ftp link	link	SRX search	link
homer denovo motifs	link
Genome view	link

Overlapping motifs:

Motif name	Number of overlap
SP1	640
Sox2	564
E2F1	351
Tcf12	346
ERG	309
TCF4	305
ELK1	303
E2F4	302
ZNF740	293
Pou5f1::Sox2	288
ZBTB7A	277
Gabpa	276
ELF1	249
MYCN	236
ETS1	236
TAL1::TCF3	234
EGR1	225
MYC	223
POU5F1B	213
NRF1	210
KLF5	205
NR2F1	195
EGR2	192
Esrrg	182
ETV1	181
BHLHE41	180
TCF3	179
MAX	174
TFAP2A	168
YY1	164
TFAP2A-var.2	163
MYBL1	158
KLF4	157
ELK4	154
OTX2	145
ZEB1	144
CTCF	142
TFDP1	140
TFAP2C	136
ELK3	135
ETV3	126
HEY1	123
FOXA1	122
TEAD4	120
SP3	120
STAT3	118
TEAD1	117
NFIC	114
BHLHE40	113
ERF	111
Atf1	103
KLF9	100
E2F6	99
ETV6	99
Foxa2	97
SP4	93
Klf1	91
RUNX1	90
NR1H2::RXRA	90
Rxra	88
SMAD2::SMAD3::SMAD4	84
CREB1	80
USF2	80
Pparg::Rxra	78
ZNF263	77
USF1	77
SP2	76
SOX9	75
NFKB1	75
MAX::MYC	74
TFAP2A-var.3	74
E2F3	72
FOS	71
RUNX3	69
FLI1	67
Esrra	66
Hnf4a	66
TFAP4	65
Tcf21	64
BATF::JUN	62
NEUROD1	62
REL	58
Sox17	58
NFYB	56
JUND	52
RELA	51
Ar	51
ELF3	51
FOSL2	51
JUN	50
Arnt	50
PAX5	49
NFYA	49
Atf3	49
PBX1	48
STAT1::STAT2	47
EBF1	46
EOMES	46
CEBPD	45
FOSL1	45
Bach1::Mafk	44
FOS::JUN	44
NFATC3	43
SPI1	43
THAP1	41
XBP1	40
FEV	39
GMEB2	39
Foxj2	38
MAFK	38
NFKB2	38
BATF3	38
Gata1	37
ARNT::HIF1A	36
Hand1::Tcf3	36
Gata4	35
NFE2	33
RUNX2	32
CEBPB	32
TP63	32
GATA3	32
EGR4	32
FOXH1	30
Nfe2l2	29
HINFP	28
FOXP1	27
TCF7L2	27
GATA2	27
NR4A2	26
ZNF143	26
Foxo1	25
Gmeb1	25
RARA::RXRA	25
MAFF	25
MAF::NFE2	25
STAT1	24
NFIA	24
Nr1h3::Rxra	24
MAFG	23
MYB	23
Ahr::Arnt	23
GATA5	23
Mafb	23
Tcf7	22
NKX3-2	22
CEBPA	22
HNF4G	22
POU2F2	21
GATA1::TAL1	20
EGR3	20
JUNB	19
SNAI2	19
ATF4	18
ZBTB33	16
HSF1	16
Stat5a::Stat5b	16
KLF13	16
SREBF2	15
Rarg	15
Arntl	14
ETV4	14
Gfi1b	13
PRDM1	13
PDX1	13
NR3C2	13
SREBF1	12
TEAD2	11
TBX1	11
NFIL3	11
CREB3L1	11
Hic1;	10
RXRB	10
Ascl2	10
RXRG	10
Rarb	10
NR2C2	10
Ddit3::Cebpa	9
LEF1	9
TP53	8
SCRT1	8
SPIB	8
FOXP3	8
ZBTB18	7
SRF	7
CLOCK	7
MYBL2	7
MEF2B	7
Arid3a	6
CDX2	6
Hes1	5
Vdr	5
ELF5	5
SMAD3	5
NFATC1	5
TP73	5
IRF1	5
RFX5	4
REST	4
GRHL1	4
BCL6B	4
Bcl6	4
MAFG::NFE2L1	4
Pax6	4
MEF2A	3
PPARG	3
Creb3l2	3
NR3C1	3
TBX19	3
Dux	3
Nkx3-1	3
GLI2	3
MEIS1	3
HNF1B	2
Nr5a2	2
RXRA::VDR	2
Tcfl5	2
BARX1	2
DBP	2
TBP	2
ATF7	2
Id2	2
DUX4	2
CREB3	2
Pitx1	1
POU3F2	1
ISL2	1
RARA	1
HSF2	1
RFX2	1
PROX1	1
Myod1	1
RORA	1
MEF2D	1