NAIK Genome Database

experiment name	hs_EmbryonicEndoderm_HUES64_normal_SMAD1_SRX702075	number of peaks	21896
antibody	SMAD1
cell line	HUES64	Number of reads	8881893
sra ftp link	link	SRX search	link
homer denovo motifs	link
Genome view	link

Motif name	Number of overlap
SP1	2332
E2F1	2080
ZNF740	1775
EGR1	1582
MYCN	1119
TFAP2A-var.2	1103
E2F4	1058
MYC	841
NRF1	839
EGR2	830
TFAP2A	787
TAL1::TCF3	739
ZBTB7A	727
NR2F1	714
KLF5	711
TCF4	655
Tcf12	638
ELK1	611
ERG	609
CTCF	580
TCF3	568
Gabpa	568
ELF1	564
MAX	534
TFAP2C	494
Sox2	482
TFAP2A-var.3	469
ETS1	447
SP3	443
Esrrg	438
ZEB1	408
SMAD2::SMAD3::SMAD4	396
E2F6	395
Klf1	394
ETV1	383
TFDP1	382
BHLHE40	378
KLF4	346
MAX::MYC	334
MYBL1	324
BHLHE41	310
KLF9	310
HEY1	302
ELK4	300
NFKB1	287
SP4	277
NFIC	276
ZNF263	271
YY1	262
USF2	254
ELK3	251
STAT3	250
SP2	246
TEAD4	230
EBF1	214
E2F3	214
TEAD1	209
EGR4	203
USF1	202
REL	198
FOS	196
Esrra	192
NR1H2::RXRA	188
OTX2	187
ERF	186
Rxra	183
Tcf21	182
SNAI2	182
RUNX1	176
Pou5f1::Sox2	172
CREB1	162
NFYB	162
NFKB2	158
JUND	158
SOX9	157
ETV6	156
BATF::JUN	156
Pparg::Rxra	156
Atf1	155
Hnf4a	154
POU5F1B	152
FOSL2	145
NFYA	144
RELA	144
JUN	141
THAP1	137
PAX5	133
FOSL1	133
Atf3	132
Arnt	132
ETV3	128
NEUROD1	127
FLI1	127
FOS::JUN	127
FOXA1	127
EGR3	120
PBX1	120
RUNX3	117
Foxa2	100
ARNT::HIF1A	99
Ahr::Arnt	95
Ar	93
NFATC3	91
Bach1::Mafk	91
NFE2	86
Gata4	85
TFAP4	84
Gata1	82
MAF::NFE2	81
GMEB2	81
Nfe2l2	80
GATA3	79
NFIA	78
BATF3	78
XBP1	77
ELF3	76
GATA2	76
SPI1	76
STAT1::STAT2	74
FEV	72
GATA5	71
Hand1::Tcf3	69
HINFP	68
KLF13	65
TCF7L2	63
Arntl	62
CEBPB	62
CEBPD	60
MAFF	57
MAFG	56
Tcf7	56
RARA::RXRA	56
HNF4G	54
NR2C2	50
MAFK	49
Foxj2	48
JUNB	48
RUNX2	47
EOMES	43
Sox17	43
Nr1h3::Rxra	42
NR4A2	41
CEBPA	40
MYB	38
NKX3-2	37
Foxo1	37
FOXH1	37
ZBTB33	37
HSF1	37
Mafb	36
TP63	35
TEAD2	32
NR3C2	31
STAT1	30
FOXP1	30
ZNF143	29
Hic1;	28
REST	25
Stat5a::Stat5b	25
Gmeb1	25
GATA1::TAL1	23
BCL6B	23
CREB3L1	22
SPIB	22
RXRB	21
PDX1	20
RXRG	20
MAFG::NFE2L1	20
LEF1	20
PRDM1	19
Rarg	19
CLOCK	19
MEF2B	18
ETV4	18
POU2F2	18
RFX5	18
CDX2	17
Arid3a	16
SREBF1	16
SCRT1	14
Vdr	14
SREBF2	14
IRF1	14
ATF4	14
TBX1	14
FOXP3	14
Bcl6	13
NFIL3	13
NFATC1	12
Gfi1b	11
Ddit3::Cebpa	11
GLI2	11
Rarb	11
Ascl2	10
ZBTB18	9
Hes1	9
SRF	9
Dux	9
MYBL2	9
MEF2A	8
CREB3	8
Creb3l2	8
RFX2	7
ELF5	6
POU3F2	6
RXRA::VDR	5
GRHL1	5
Nkx3-1	5
Rfx1	4
BARX1	4
Pax6	4
TP53	4
HNF1B	4
NR3C1	3
Id2	3
TBX19	3
DUX4	3
Nr5a2	3
PROX1	3
TP73	3
Pitx1	2
HOXA13	2
MEF2D	2
PPARG	2
ATF7	2
Klf12	2
Sox1	2
Mecom	1
FOS::JUND	1
Stat4	1
HES5	1
MTF1	1
NFIC::TLX1	1
MEIS1	1
HNF1A	1
RARA	1
Myod1	1
SREBF2(var.2)	1
HOXA5	1
MIXL1	1
SMAD3	1
FOS::JUNB	1
ISX	1
RORA(var.2)	1
TFEB	1

Motif name

Number of overlap

2332

2080

1775

1582

1119