NAIK Genome Database

experiment name	hs_ColorectalCarcinoma_HCT116_Cancer_RNAPII_SRX105742	number of peaks	36271
antibody	RNAPII
cell line	HCT116	Number of reads	6530182
sra ftp link	link	SRX search	link
homer denovo motifs	link
Genome view	link

Motif name	Number of overlap
SP1	2507
E2F1	2443
MYCN	2430
MYC	2355
ERG	1770
TAL1::TCF3	1696
ZNF740	1682
E2F4	1658
ELF1	1593
TCF4	1543
Gabpa	1497
Tcf12	1494
EGR1	1475
ZBTB7A	1445
HEY1	1425
MAX	1420
YY1	1326
ELK1	1324
TCF3	1308
TFAP2C	1301
ZEB1	1280
NR2F1	1266
NRF1	1248
TFAP2A-var.2	1233
EGR2	1227
TFAP2A	1221
Esrrg	1201
ETS1	1135
MAX::MYC	970
CTCF	950
NFIC	911
MYBL1	858
ETV1	837
BHLHE41	781
KLF5	779
FOS	778
E2F6	763
BHLHE40	760
KLF4	758
STAT3	719
ZNF263	639
TFDP1	626
FOSL2	622
JUND	610
USF2	606
BATF::JUN	602
FOSL1	586
ELK4	575
Esrra	558
Sox2	545
JUN	536
RUNX1	535
ELK3	522
Atf3	512
TFAP2A-var.3	510
FOS::JUN	504
USF1	488
NFKB1	476
Tcf21	467
ERF	466
FLI1	454
ETV3	442
PBX1	432
Ar	410
KLF9	397
Klf1	391
ETV6	385
ELF3	385
EBF1	382
SP3	369
Rxra	366
NEUROD1	363
NR1H2::RXRA	358
RUNX3	356
REL	342
Hnf4a	342
TEAD4	335
Pparg::Rxra	333
Arnt	322
TFAP4	319
E2F3	317
THAP1	312
FOXA1	296
PAX5	288
STAT1::STAT2	286
SMAD2::SMAD3::SMAD4	283
RELA	280
CREB1	258
ARNT::HIF1A	252
NFKB2	249
SNAI2	249
TEAD1	244
SPI1	242
SOX9	240
Atf1	238
NFIA	224
Hand1::Tcf3	224
OTX2	222
NFE2	219
Gata1	215
EGR4	215
NFATC3	215
FEV	205
GATA3	198
Nfe2l2	196
CEBPB	194
Foxa2	189
CEBPD	187
JUNB	186
TP63	184
Ahr::Arnt	181
POU5F1B	171
MAF::NFE2	169
Gata4	161
GATA2	160
CEBPA	157
SP2	154
GATA5	154
Bach1::Mafk	149
SP4	147
MAFF	144
XBP1	144
RUNX2	139
NR3C2	135
HINFP	131
HNF4G	127
MAFG	125
MAFK	114
NR4A2	112
Mafb	112
STAT1	112
Foxj2	110
EGR3	107
ZNF143	104
BATF3	101
GMEB2	99
MYB	98
Stat5a::Stat5b	94
Arntl	93
HSF1	93
RARA::RXRA	90
GATA1::TAL1	86
TCF7L2	83
NFYB	81
Hic1;	80
NKX3-2	80
Nr1h3::Rxra	80
Gmeb1	79
ETV4	77
Foxo1	73
NFYA	71
KLF13	70
Tcf7	61
PRDM1	61
ATF4	61
EOMES	58
TEAD2	55
TP73	51
ZBTB33	51
BCL6B	50
FOXH1	50
SPIB	50
FOXP1	49
CREB3L1	49
NFATC1	46
TP53	46
PDX1	46
REST	44
Vdr	43
IRF1	43
Bcl6	42
CDX2	41
Rarg	41
RXRB	41
SCRT1	41
Pou5f1::Sox2	40
CLOCK	38
NFIL3	38
MEF2B	37
Gfi1b	37
NR2C2	34
RXRG	34
Ddit3::Cebpa	33
Rarb	32
TBX1	31
MAFG::NFE2L1	31
FOXP3	29
SRF	28
Ascl2	28
SREBF1	27
SREBF2	27
Sox17	25
GLI2	25
MEF2A	23
ELF5	22
MYBL2	21
ZBTB18	20
Arid3a	20
RFX5	19
GRHL1	17
NR3C1	16
Nkx3-1	15
Mecom	14
CREB3	14
RXRA::VDR	13
Dux	12
TBX19	12
POU2F2	11
Creb3l2	11
Pax6	10
PPARG	10
HNF1B	10
Hes1	9
MEF2D	9
PROX1	9
BARX1	9
Id2	8
RFX2	8
Nr5a2	7
LEF1	7
Pitx1	7
SMAD3	7
Rfx1	6
MEIS1	5
HOXA5	5
HSF2	4
DUX4	4
HNF1A	4
E2F8	4
RARA	4
Klf12	3
MIXL1	3
Tcfl5	3
RORA	2
Srebf1(var.2)	2
Stat4	2
Nkx2-5-var.2	2
DBP	2
RORA(var.2)	2
POU3F2	2
FOXO4	1
MTF1	1
HES5	1
FOSB::JUN	1
TFE3	1
FOS::JUNB	1
HOXA13	1
SREBF2(var.2)	1
IRF2	1
ISX	1
FOS::JUN(var.2)	1
Arx	1
FOS::JUND	1

Motif name

Number of overlap

2507

2443

2430

2355

1770