NAIK Genome Database

experiment name	hs_ColonCarcinoma_RKO_cancer_HBO1_SRX101303	number of peaks	18626
antibody	HBO1
cell line	RKO	Number of reads	30698600
sra ftp link	link	SRX search	link
homer denovo motifs	link
Genome view	link

Motif name	Number of overlap
MYCN	1126
MYC	1064
E2F1	953
SP1	810
TAL1::TCF3	787
TCF4	703
MAX	674
TFAP2A-var.2	626
Tcf12	617
TCF3	611
EGR1	609
TFAP2A	591
ZBTB7A	578
TFAP2C	576
E2F4	563
ZEB1	561
ZNF740	546
NR2F1	518
ERG	506
EGR2	466
Gabpa	436
Esrrg	432
MAX::MYC	431
CTCF	410
ELF1	399
E2F6	390
ZNF263	358
NRF1	343
HEY1	324
RUNX1	305
BHLHE41	295
YY1	290
KLF4	278
ELK1	274
Sox2	273
TFAP2A-var.3	268
ETS1	267
Ar	253
STAT3	251
MYBL1	247
BHLHE40	247
NFIC	244
TFDP1	238
NFKB1	234
Esrra	218
KLF9	207
EBF1	198
ETV1	182
FOXA1	180
Arnt	171
FLI1	168
RUNX3	161
USF2	158
POU5F1B	154
Gata1	153
KLF5	153
REL	152
TEAD4	148
PAX5	145
FOS	143
SNAI2	142
Rxra	141
Hnf4a	140
ARNT::HIF1A	133
Pparg::Rxra	130
USF1	129
Tcf21	127
NFKB2	127
SPI1	122
OTX2	121
ELK4	120
FEV	120
RELA	119
SMAD2::SMAD3::SMAD4	118
NEUROD1	116
NR1H2::RXRA	116
Klf1	116
TEAD1	113
ETV6	110
SP3	108
STAT1::STAT2	108
Foxa2	107
TFAP4	107
PBX1	104
Hand1::Tcf3	103
THAP1	102
ELK3	100
SOX9	99
GATA2	98
GATA3	94
JUND	91
GATA5	90
BATF::JUN	90
NFATC3	90
FOSL2	88
Gata4	87
ETV3	86
ELF3	85
ERF	82
E2F3	82
CEBPB	80
NR3C2	79
FOSL1	79
JUN	77
Ahr::Arnt	75
NFIA	70
CREB1	68
CEBPD	67
CEBPA	67
Atf1	66
HNF4G	65
Atf3	65
FOS::JUN	65
EGR4	64
TCF7L2	60
HINFP	56
SPIB	55
RARA::RXRA	53
NR4A2	53
Hic1;	49
Tcf7	47
MYB	47
TP63	47
Stat5a::Stat5b	44
MAF::NFE2	43
GATA1::TAL1	42
Pou5f1::Sox2	41
Foxj2	41
NFE2	40
RUNX2	40
Foxo1	39
Nfe2l2	39
STAT1	38
Gmeb1	36
Mafb	35
Bach1::Mafk	35
Nr1h3::Rxra	35
HSF1	33
REST	33
BATF3	32
EOMES	32
KLF13	31
BCL6B	31
XBP1	31
PRDM1	30
MAFF	29
EGR3	29
MAFK	28
NKX3-2	27
TEAD2	27
Bcl6	27
MAFG	27
FOXP1	24
FOXH1	24
IRF1	24
JUNB	24
SCRT1	23
ZNF143	23
PDX1	22
Arntl	22
SP4	21
Vdr	21
NFYB	21
SP2	21
CREB3L1	20
GMEB2	20
ATF4	19
ZBTB33	19
RXRB	17
NR2C2	17
RXRG	16
TP73	16
GLI2	15
TBX1	15
NFIL3	14
NFATC1	14
Gfi1b	13
Rarg	13
NFYA	13
TP53	12
Dux	12
ETV4	12
Ddit3::Cebpa	11
Arid3a	11
FOXP3	11
SRF	11
MEF2B	10
MEF2A	10
Sox17	9
LEF1	9
Tcfl5	8
NR3C1	8
Rarb	8
PROX1	8
CDX2	8
RXRA::VDR	8
DUX4	8
Ascl2	8
CLOCK	7
POU2F2	7
SREBF2	7
RFX5	7
TBX19	6
GRHL1	6
MYBL2	6
Nkx3-1	6
RORA(var.2)	6
SREBF1	6
ZBTB18	5
Id2	4
ELF5	4
PPARG	4
Srebf1(var.2)	4
Hes1	4
Pax6	4
CREB3	4
Nr5a2	3
NKX2-3	3
MAFG::NFE2L1	3
Mecom	3
MEF2D	3
MEIS1	2
HNF1B	2
RORA	2
FOS::JUN(var.2)	2
BARX1	2
HSF2	2
Rfx1	1
Klf12	1
Creb3l2	1
RARA	1
FOXO4	1
SOX4	1
RFX2	1
MTF1	1
SMAD3	1
NKX2-8	1
HOXB13	1
HOXA5	1
Stat4	1
Znf423	1
Hoxa9	1
HNF1A	1
HOXA13	1
FOSB::JUN	1

Motif name

Number of overlap

1126

1064

953

810

787