Information for 8-TTGGCCATGGCGA (Motif 9)

A G C T A C G T A C T G C T A G A G T C A G T C G T C A A C G T A C T G A T C G T G A C A T C G C G T A
Reverse Opposite:
A C G T A T G C A C T G A T G C A G T C T G C A A C G T A C T G A C T G A G T C A G T C C G T A C T G A
p-value:1e-10
log p-value:-2.444e+01
Information Content per bp:1.861
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.57%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets34.8 +/- 32.3bp
Average Position of motif in Background57.4 +/- 15.1bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:TTGGCCATGGCGA--
-TTGCCATGGCAACN
 A G C T A C G T A C T G C T A G A G T C A G T C G T C A A C G T A C T G A T C G T G A C A T C G C G T A A C G T A C G T
A C G T A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:TTGGCCATGGCGA--
-TTGCCATGGCAACC
 A G C T A C G T A C T G C T A G A G T C A G T C G T C A A C G T A C T G A T C G T G A C A T C G C G T A A C G T A C G T
A C G T A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:3
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TTGGCCATGGCGA
BNTGDCCTTG----
 A C G T A G C T A C G T A C T G C T A G A G T C A G T C G T C A A C G T A C T G A T C G T G A C A T C G C G T A
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T A C G T A C G T

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:4
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TTGGCCATGGCGA-
KGTTGCCATGGCAAC
 A C G T A G C T A C G T A C T G C T A G A G T C A G T C G T C A A C G T A C T G A T C G T G A C A T C G C G T A A C G T
A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:5
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TTGGCCATGGCGA
-TGACCTTGAV--
 A G C T A C G T A C T G C T A G A G T C A G T C G T C A A C G T A C T G A T C G T G A C A T C G C G T A
A C G T G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A A C G T A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TTGGCCATGGCGA-
GTTGCCATGGNAAC
 A G C T A C G T A C T G C T A G A G T C A G T C G T C A A C G T A C T G A T C G T G A C A T C G C G T A A C G T
A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:7
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:TTGGCCATGGCGA
-TGACCTTGAN--
 A G C T A C G T A C T G C T A G A G T C A G T C G T C A A C G T A C T G A T C G T G A C A T C G C G T A
A C G T G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A A C G T A C G T

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:8
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TTGGCCATGGCGA-
CGGTTGCCATGGCAAC
 A C G T A C G T A G C T A C G T A C T G C T A G A G T C A G T C G T C A A C G T A C T G A T C G T G A C A T C G C G T A A C G T
A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C

RFX4/MA0799.1/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TTGGCCATGGCGA--
CGTTGCCATGGCAACN
 A C G T A G C T A C G T A C T G C T A G A G T C A G T C G T C A A C G T A C T G A T C G T G A C A T C G C G T A A C G T A C G T
A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C G T A G A T C T A C G

RFX3/MA0798.1/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TTGGCCATGGCGA--
CGTTGCCATGGCAACG
 A C G T A G C T A C G T A C T G C T A G A G T C A G T C G T C A A C G T A C T G A T C G T G A C A T C G C G T A A C G T A C G T
A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A T C G A G A T C T A C G