Information for 1-HGTGGGTAATGACTGT (Motif 4)

G C T A A T C G C G A T C T A G A C T G C A T G C A G T C G T A C G T A C G A T C A T G C T G A G T A C A G C T C T A G A C G T
Reverse Opposite:
T G C A G A T C C T G A A C T G A G C T G A T C C G T A G A C T A C G T G T C A G T A C G T A C A G T C C G T A A T G C C A G T
p-value:1e-13
log p-value:-3.202e+01
Information Content per bp:1.715
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.9 +/- 23.1bp
Average Position of motif in Background35.2 +/- 13.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0061.1_Hoxb6/Jaspar

Match Rank:1
Score:0.60
Offset:0
Orientation:forward strand
Alignment:HGTGGGTAATGACTGT
TATTGGTAATTACCTT
 G C T A A T C G C G A T C T A G A C T G C A T G C A G T C G T A C G T A C G A T C A T G C T G A G T A C A G C T C T A G A C G T
G C A T G C T A C A G T C A G T A T C G A C T G A G C T G T C A C G T A C G A T C A G T C T G A G T A C T A G C C A G T A G C T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:HGTGGGTAATGACTGT
----GTTAATGGCC--
 G C T A A T C G C G A T C T A G A C T G C A T G C A G T C G T A C G T A C G A T C A T G C T G A G T A C A G C T C T A G A C G T
A C G T A C G T A C G T A C G T A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T A C G T

PH0023.1_Dlx4/Jaspar

Match Rank:3
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:HGTGGGTAATGACTGT--
-GTCGGTAATTATNGNGN
 G C T A A T C G C G A T C T A G A C T G C A T G C A G T C G T A C G T A C G A T C A T G C T G A G T A C A G C T C T A G A C G T A C G T A C G T
A C G T C A T G C G A T A T G C C A T G A C T G G A C T C G T A C G T A A C G T G C A T C T G A G A C T G T C A A C T G A G T C C A T G T G A C

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:4
Score:0.59
Offset:4
Orientation:forward strand
Alignment:HGTGGGTAATGACTGT
----GKTAATGR----
 G C T A A T C G C G A T C T A G A C T G C A T G C A G T C G T A C G T A C G A T C A T G C T G A G T A C A G C T C T A G A C G T
A C G T A C G T A C G T A C G T A C T G C A G T A C G T C G T A C G T A A C G T A C T G C T G A A C G T A C G T A C G T A C G T

PH0053.1_Hoxa6/Jaspar

Match Rank:5
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:HGTGGGTAATGACTGT
NTNAGGTAATTACCTT
 G C T A A T C G C G A T C T A G A C T G C A T G C A G T C G T A C G T A C G A T C A T G C T G A G T A C A G C T C T A G A C G T
G T C A C G A T C A G T C T G A C T A G A C T G G A C T G T C A G C T A C A G T C A G T C T G A G T A C G A T C C A G T A G C T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:6
Score:0.57
Offset:2
Orientation:forward strand
Alignment:HGTGGGTAATGACTGT
--TGATTRATGGCY--
 G C T A A T C G C G A T C T A G A C T G C A T G C A G T C G T A C G T A C G A T C A T G C T G A G T A C A G C T C T A G A C G T
A C G T A C G T C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C A C G T A C G T

PH0072.1_Hoxc8/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:forward strand
Alignment:HGTGGGTAATGACTGT
TTGGGGTAATTAACGT
 G C T A A T C G C G A T C T A G A C T G C A T G C A G T C G T A C G T A C G A T C A T G C T G A G T A C A G C T C T A G A C G T
A C G T G C A T C A T G C T A G C T A G C A T G G A C T G T C A G C T A C A G T C A G T C T G A G T C A A G T C C A T G A C G T

MEOX1/MA0661.1/Jaspar

Match Rank:8
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:HGTGGGTAATGACTGT
----GNTAATTAGN--
 G C T A A T C G C G A T C T A G A C T G C A T G C A G T C G T A C G T A C G A T C A T G C T G A G T A C A G C T C T A G A C G T
A C G T A C G T A C G T A C G T A T C G C A G T G A C T T G C A C T G A G C A T A C G T C T G A A T C G A G T C A C G T A C G T

PH0052.1_Hoxa5/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:HGTGGGTAATGACTGT
NTGAGCTAATTACCNT
 G C T A A T C G C G A T C T A G A C T G C A T G C A G T C G T A C G T A C G A T C A T G C T G A G T A C A G C T C T A G A C G T
G A T C G C A T C A T G C G T A C T A G A T G C G A C T G T C A G T C A A C G T A C G T C T G A T G A C G A T C A C T G A G C T

PH0073.1_Hoxc9/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:HGTGGGTAATGACTGT-
-NNAATTAATGACCNNN
 G C T A A T C G C G A T C T A G A C T G C A T G C A G T C G T A C G T A C G A T C A T G C T G A G T A C A G C T C T A G A C G T A C G T
A C G T T G C A G C A T C T G A C T G A C G A T A C G T C G T A C G T A A G C T A C T G C T G A A G T C G A T C A G C T G T A C A G T C