Information for 17-CGATCCGCAGCAG (Motif 17)

A G T C A T C G C G T A A C G T A G T C A G T C A C T G A G T C C G T A A C T G T G A C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G A G T C A C G T A C T G A G T C A C T G A C T G G T C A A C G T A T G C A C T G
p-value:1e-8
log p-value:-1.929e+01
Information Content per bp:1.940
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.59%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets55.4 +/- 15.5bp
Average Position of motif in Background17.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.62
Offset:5
Orientation:forward strand
Alignment:CGATCCGCAGCAG----
-----CACAGCAGGGGG
 A G T C A T C G C G T A A C G T A G T C A G T C A C T G A G T C C G T A A C T G T G A C C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

NHLH1/MA0048.2/Jaspar

Match Rank:2
Score:0.59
Offset:5
Orientation:forward strand
Alignment:CGATCCGCAGCAG--
-----CGCAGCTGCG
 A G T C A T C G C G T A A C G T A G T C A G T C A C T G A G T C C G T A A C T G T G A C C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G A C T C A G G T A C T G C A A T C G T A G C A C G T T A C G G A T C A C T G

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CGATCCGCAGCAG----
--CCACACAGCAGGAGA
 A G T C A T C G C G T A A C G T A G T C A G T C A C T G A G T C C G T A A C T G T G A C C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CGATCCGCAGCAG----
--CCACACAGCAGGAGA
 A G T C A T C G C G T A A C G T A G T C A G T C A C T G A G T C C G T A A C T G T G A C C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0207.1_Zic3_2/Jaspar

Match Rank:5
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CGATCCGCAGCAG----
--GAGCACAGCAGGACA
 A G T C A T C G C G T A A C G T A G T C A G T C A C T G A G T C C G T A A C T G T G A C C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:CGATCCGCAGCAG------
----DCHCAGCAGGRGGCC
 A G T C A T C G C G T A A C G T A G T C A G T C A C T G A G T C C G T A A C T G T G A C C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.54
Offset:6
Orientation:forward strand
Alignment:CGATCCGCAGCAG---
------NCAGCTGCTG
 A G T C A T C G C G T A A C G T A G T C A G T C A C T G A G T C C G T A A C T G T G A C C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G T C C G T A A T C G A T G C C G A T A C T G A G T C A G C T A C T G

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:8
Score:0.54
Offset:5
Orientation:forward strand
Alignment:CGATCCGCAGCAG
-----ANCAGCTG
 A G T C A T C G C G T A A C G T A G T C A G T C A C T G A G T C C G T A A C T G T G A C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G

Myog/MA0500.1/Jaspar

Match Rank:9
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:CGATCCGCAGCAG--
----NNGCAGCTGTC
 A G T C A T C G C G T A A C G T A G T C A G T C A C T G A G T C C G T A A C T G T G A C C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A T G C G A C T A T C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G T C

PB0003.1_Ascl2_1/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CGATCCGCAGCAG-----
-NNNNAGCAGCTGCTGAN
 A G T C A T C G C G T A A C G T A G T C A G T C A C T G A G T C C G T A A C T G T G A C C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T G T A C C G T A C T A G A C G T T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T C A G T G C A T C A G