Information for 4-GGAACTTGCCAGA (Motif 8)

C A T G A T C G C G T A G C T A A T G C G C A T A C G T A T C G A G T C A G T C C G T A T A C G G T C A
Reverse Opposite:
C A G T A T G C A C G T A C T G T A C G T A G C T G C A C G T A T A C G C A G T G C A T A T G C G T A C
p-value:1e-10
log p-value:-2.478e+01
Information Content per bp:1.674
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif3.16%
Number of Background Sequences with motif294.1
Percentage of Background Sequences with motif0.60%
Average Position of motif in Targets49.0 +/- 30.1bp
Average Position of motif in Background52.4 +/- 27.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:1
Score:0.73
Offset:5
Orientation:reverse strand
Alignment:GGAACTTGCCAGA--
-----ATGCCAGACN
 C A T G A T C G C G T A G C T A A T G C G C A T A C G T A T C G A G T C A G T C C G T A T A C G G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:GGAACTTGCCAGA
----CTTGGCAA-
 C A T G A T C G C G T A G C T A A T G C G C A T A C G T A T C G A G T C A G T C C G T A T A C G G T C A
A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T

HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer

Match Rank:3
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GGAACTTGCCAGA-
TAGAANVTTCTAGAA
 A C G T C A T G A T C G C G T A G C T A A T G C G C A T A C G T A T C G A G T C A G T C C G T A T A C G G T C A A C G T
G A C T C T G A T C A G T G C A C G T A A T G C T A C G G A C T C A G T A G T C G A C T C T G A C A T G T C G A C T G A

HSF4/MA0771.1/Jaspar

Match Rank:4
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GGAACTTGCCAGA-
-GAANNTTCTAGAA
 C A T G A T C G C G T A G C T A A T G C G C A T A C G T A T C G A G T C A G T C C G T A T A C G G T C A A C G T
A C G T T C A G G C T A G C T A A G T C T C A G C G A T C G A T T A G C A G C T T C G A A T C G G T C A G C T A

HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----GGAACTTGCCAGA---
TTCTAGAANNTTCCAGAANN
 A C G T A C G T A C G T A C G T C A T G A T C G C G T A G C T A A T G C G C A T A C G T A T C G A G T C A G T C C G T A T A C G G T C A A C G T A C G T A C G T
A C G T A C G T T A G C A G C T T C G A C T A G G T C A C T G A A T C G T A G C G A C T C A G T A T G C A G T C C T G A A C T G T C G A T C G A A T C G T A C G

HSF1/MA0486.2/Jaspar

Match Rank:6
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GGAACTTGCCAGA-
-GAACGTTCTAGAA
 C A T G A T C G C G T A G C T A A T G C G C A T A C G T A T C G A G T C A G T C C G T A T A C G G T C A A C G T
A C G T C T A G G C T A C G T A A G T C T C A G C G A T C A G T A G T C A C G T T C G A A C T G G T C A G C T A

HSF2/MA0770.1/Jaspar

Match Rank:7
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GGAACTTGCCAGA-
-GAANGTTCTAGAA
 C A T G A T C G C G T A G C T A A T G C G C A T A C G T A T C G A G T C A G T C C G T A T A C G G T C A A C G T
A C G T T C A G C T G A G C T A G A T C T C A G G C A T C A G T G A T C A G C T T C G A A C T G G T C A G C T A

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.63
Offset:4
Orientation:forward strand
Alignment:GGAACTTGCCAGA
----CGTGCCAAG
 C A T G A T C G C G T A G C T A A T G C G C A T A C G T A T C G A G T C A G T C C G T A T A C G G T C A
A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.63
Offset:6
Orientation:reverse strand
Alignment:GGAACTTGCCAGA
------TGCCAA-
 C A T G A T C G C G T A G C T A A T G C G C A T A C G T A T C G A G T C A G T C C G T A T A C G G T C A
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:10
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GGAACTTGCCAGA
GGAAATTCCC---
 C A T G A T C G C G T A G C T A A T G C G C A T A C G T A T C G A G T C A G T C C G T A T A C G G T C A
A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T A C G T A C G T