Information for 3-CTGGCCCCHGHAGGTC (Motif 3)

A G T C A C G T C T A G A C T G A G T C G A T C A G T C A G T C G C T A A C T G G A C T C G T A T C A G A C T G C G A T A G T C
Reverse Opposite:
C T A G C G T A G T A C A G T C C G A T C G T A A G T C C A G T T A C G A C T G C T A G A C T G A G T C A G T C C G T A A C T G
p-value:1e-12
log p-value:-2.952e+01
Information Content per bp:1.772
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif3.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets68.4 +/- 11.8bp
Average Position of motif in Background67.9 +/- 3.5bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIX/MA0671.1/Jaspar

Match Rank:1
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCCCCHGHAGGTC
NTTGGCANN--------
 A C G T A G T C A C G T C T A G A C T G A G T C G A T C A G T C A G T C G C T A A C T G G A C T C G T A T C A G A C T G C G A T A G T C
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:2
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CTGGCCCCHGHAGGTC
TTGGCA----------
 A G T C A C G T C T A G A C T G A G T C G A T C A G T C A G T C G C T A A C T G G A C T C G T A T C A G A C T G C G A T A G T C
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---CTGGCCCCHGHAGGTC
TGTCTGDCACCT-------
 A C G T A C G T A C G T A G T C A C G T C T A G A C T G A G T C G A T C A G T C A G T C G C T A A C T G G A C T C G T A T C A G A C T G C G A T A G T C
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:4
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----CTGGCCCCHGHAGGTC
CTGTCTGTCACCT-------
 A C G T A C G T A C G T A C G T A G T C A C G T C T A G A C T G A G T C G A T C A G T C A G T C G C T A A C T G G A C T C G T A T C A G A C T G C G A T A G T C
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:5
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---CTGGCCCCHGHAGGTC
GGTCTGGCAT---------
 A C G T A C G T A C G T A G T C A C G T C T A G A C T G A G T C G A T C A G T C A G T C G C T A A C T G G A C T C G T A T C A G A C T G C G A T A G T C
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.50
Offset:2
Orientation:reverse strand
Alignment:CTGGCCCCHGHAGGTC
--GGCTCYAKCAYC--
 A G T C A C G T C T A G A C T G A G T C G A T C A G T C A G T C G C T A A C T G G A C T C G T A T C A G A C T G C G A T A G T C
A C G T A C G T C A T G A C T G A G T C A C G T A G T C G A T C C G T A A C T G T A G C C T G A A G C T T A G C A C G T A C G T

ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.49
Offset:-4
Orientation:forward strand
Alignment:----CTGGCCCCHGHAGGTC
NGNTCTAGAACCNGV-----
 A C G T A C G T A C G T A C G T A G T C A C G T C T A G A C T G A G T C G A T C A G T C A G T C G C T A A C T G G A C T C G T A T C A G A C T G C G A T A G T C
C T G A T C A G G C T A A G C T A G T C G A C T C T G A C T A G T G C A C T G A A G T C G T A C G A T C A C T G T C G A A C G T A C G T A C G T A C G T A C G T

HES7/MA0822.1/Jaspar

Match Rank:8
Score:0.47
Offset:1
Orientation:reverse strand
Alignment:CTGGCCCCHGHAGGTC
-TGGCACGTGCCA---
 A G T C A C G T C T A G A C T G A G T C G A T C A G T C A G T C G C T A A C T G G A C T C G T A T C A G A C T G C G A T A G T C
A C G T G A C T T A C G C T A G A G T C C G T A A G T C A C T G A G C T C T A G A G T C A G T C C T G A A C G T A C G T A C G T

Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.47
Offset:-2
Orientation:reverse strand
Alignment:--CTGGCCCCHGHAGGTC--
AACCGGTTNNAACCGGTTTN
 A C G T A C G T A G T C A C G T C T A G A C T G A G T C G A T C A G T C A G T C G C T A A C T G G A C T C G T A T C A G A C T G C G A T A G T C A C G T A C G T
C T G A C T G A A T G C G A T C C T A G A T C G G A C T G A C T A G C T C T A G C T G A C T G A A T G C G A T C C T A G A T C G G A C T G A C T A G C T A C T G

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:10
Score:0.47
Offset:1
Orientation:forward strand
Alignment:CTGGCCCCHGHAGGTC
-SNGCACCTGCHS---
 A G T C A C G T C T A G A C T G A G T C G A T C A G T C A G T C G C T A A C T G G A C T C G T A T C A G A C T G C G A T A G T C
A C G T T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C A C G T A C G T A C G T