Information for 3-TGKCCTCTCAGTCTTC (Motif 7)

C G A T A T C G C A G T A G T C A G T C C A G T A T G C A C G T A G T C C G T A A T C G A C G T A G T C C A G T A G C T G T A C
Reverse Opposite:
A C T G C T G A G C T A A C T G T G C A A T G C C G A T C T A G C G T A A T C G G T C A A C T G A C T G G T C A A T G C C G T A
p-value:1e-12
log p-value:-2.804e+01
Information Content per bp:1.778
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.91%
Number of Background Sequences with motif4.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets40.4 +/- 20.6bp
Average Position of motif in Background65.5 +/- 12.6bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:1
Score:0.64
Offset:2
Orientation:forward strand
Alignment:TGKCCTCTCAGTCTTC
--GSCTGTCACTCA--
 C G A T A T C G C A G T A G T C A G T C C A G T A T G C A C G T A G T C C G T A A T C G A C G T A G T C C A G T A G C T G T A C
A C G T A C G T C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.60
Offset:3
Orientation:forward strand
Alignment:TGKCCTCTCAGTCTTC
---NCTGTCAATCAN-
 C G A T A T C G C A G T A G T C A G T C C A G T A T G C A C G T A G T C C G T A A T C G A C G T A G T C C A G T A G C T G T A C
A C G T A C G T A C G T T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:3
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TGKCCTCTCAGTCTTC
TGACCTYA--------
 C G A T A T C G C A G T A G T C A G T C C A G T A T G C A C G T A G T C C G T A A T C G A C G T A G T C C A G T A G C T G T A C
A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:4
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TGKCCTCTCAGTCTTC
TGACCYCT--------
 C G A T A T C G C A G T A G T C A G T C C A G T A T G C A C G T A G T C C G T A A T C G A C G T A G T C C A G T A G C T G T A C
A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:5
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----TGKCCTCTCAGTCTTC
NNNNTGACCTTTNNNN----
 A C G T A C G T A C G T A C G T C G A T A T C G C A G T A G T C A G T C C A G T A T G C A C G T A G T C C G T A A T C G A C G T A G T C C A G T A G C T G T A C
A G T C C G A T A T G C C A T G A G C T T C A G G T C A G T A C G T A C A G C T A G C T G C A T C A T G T C G A C A T G G T C A A C G T A C G T A C G T A C G T

PH0140.1_Pknox1/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--TGKCCTCTCAGTCTTC
AAAGACCTGTCAATCC--
 A C G T A C G T C G A T A T C G C A G T A G T C A G T C C A G T A T G C A C G T A G T C C G T A A T C G A C G T A G T C C A G T A G C T G T A C
C G T A C T G A T G C A A T C G C T G A A T G C T G A C A G C T C T A G G C A T A G T C C G T A G C T A G C A T T G A C T G A C A C G T A C G T

PH0141.1_Pknox2/Jaspar

Match Rank:7
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--TGKCCTCTCAGTCTTC
AAGCACCTGTCAATAT--
 A C G T A C G T C G A T A T C G C A G T A G T C A G T C C A G T A T G C A C G T A G T C C G T A A T C G A C G T A G T C C A G T A G C T G T A C
G C T A C T G A T C A G A T G C T C G A T A G C G T A C A G C T A C T G G A C T A G T C C T G A G T C A G C A T G C T A A G C T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:8
Score:0.56
Offset:3
Orientation:forward strand
Alignment:TGKCCTCTCAGTCTTC
---SCTGTCAVTCAV-
 C G A T A T C G C A G T A G T C A G T C C A G T A T G C A C G T A G T C C G T A A T C G A C G T A G T C C A G T A G C T G T A C
A C G T A C G T A C G T T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:9
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:TGKCCTCTCAGTCTTC
---GCTGTCAA-----
 C G A T A T C G C A G T A G T C A G T C C A G T A T G C A C G T A G T C C G T A A T C G A C G T A G T C C A G T A G C T G T A C
A C G T A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T A C G T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:10
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----TGKCCTCTCAGTCTTC
NNNGTGACCTTTGNNN----
 A C G T A C G T A C G T A C G T C G A T A T C G C A G T A G T C A G T C C A G T A T G C A C G T A G T C C G T A A T C G A C G T A G T C C A G T A G C T G T A C
G T A C C G T A A T C G C T A G A G C T T C A G G T C A G T A C G T A C A G C T A G C T C G A T C A T G T C G A C A T G G T C A A C G T A C G T A C G T A C G T