Information for 2-TCACCATTGGAAC (Motif 3)

A C G T G T A C C G T A A T G C A G T C G C T A A G C T G A C T A C T G A C T G C G T A C T G A A T G C
Reverse Opposite:
A T C G A G C T C G A T A G T C A G T C C G T A C T G A C G A T C T A G A T C G C G A T A C T G T C G A
p-value:1e-12
log p-value:-2.969e+01
Information Content per bp:1.747
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.04%
Number of Background Sequences with motif6.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets53.1 +/- 33.4bp
Average Position of motif in Background49.0 +/- 31.3bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1/MA0509.1/Jaspar

Match Rank:1
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TCACCATTGGAAC
GTTGCCATGGCAAC
 A C G T A C G T G T A C C G T A A T G C A G T C G C T A A G C T G A C T A C T G A C T G C G T A C T G A A T G C
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.60
Offset:7
Orientation:forward strand
Alignment:TCACCATTGGAAC----
-------TGGAACAGMA
 A C G T G T A C C G T A A T G C A G T C G C T A A G C T G A C T A C T G A C T G C G T A C T G A A T G C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T A C T G T C A G T G C A G C T A A T G C T C G A A T C G G T C A T G C A

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TCACCATTGGAAC-
TTGCCATGGCAACN
 A C G T G T A C C G T A A T G C A G T C G C T A A G C T G A C T A C T G A C T G C G T A C T G A A T G C A C G T
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

PB0194.1_Zbtb12_2/Jaspar

Match Rank:4
Score:0.59
Offset:1
Orientation:forward strand
Alignment:TCACCATTGGAAC---
-TATCATTAGAACGCT
 A C G T G T A C C G T A A T G C A G T C G C T A A G C T G A C T A C T G A C T G C G T A C T G A A T G C A C G T A C G T A C G T
A C G T G C A T T G C A G A C T A T G C T C G A C G A T C A G T C T G A C A T G G C T A G T C A G T A C A C T G A G T C C G A T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:5
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TCACCATTGGAAC-
TTGCCATGGCAACC
 A C G T G T A C C G T A A T G C A G T C G C T A A G C T G A C T A C T G A C T G C G T A C T G A A T G C A C G T
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

NFIC/MA0161.1/Jaspar

Match Rank:6
Score:0.57
Offset:6
Orientation:forward strand
Alignment:TCACCATTGGAAC
------TTGGCA-
 A C G T G T A C C G T A A T G C A G T C G C T A A G C T G A C T A C T G A C T G C G T A C T G A A T G C
A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:forward strand
Alignment:TCACCATTGGAAC---
-TACCATAGCAACGGT
 A C G T G T A C C G T A A T G C A G T C G C T A A G C T G A C T A C T G A C T G C G T A C T G A A T G C A C G T A C G T A C G T
A C G T A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

NFATC1/MA0624.1/Jaspar

Match Rank:8
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:TCACCATTGGAAC--
-----NNTGGAAANN
 A C G T G T A C C G T A A T G C A G T C G C T A A G C T G A C T A C T G A C T G C G T A C T G A A T G C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A C T G A G A C T C T A G A C T G C T G A C T G A G C T A C G T A G C A T

PB0115.1_Ehf_2/Jaspar

Match Rank:9
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:TCACCATTGGAAC-----
--AAGATCGGAANTNNNA
 A C G T G T A C C G T A A T G C A G T C G C T A A G C T G A C T A C T G A C T G C G T A C T G A A T G C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G T A G C T A A T C G C G T A C G A T T G A C C A T G C T A G C G T A C G T A T G C A G A C T G T C A A G T C G C A T G C T A

RFX3/MA0798.1/Jaspar

Match Rank:10
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--TCACCATTGGAAC-
CGTTGCCATGGCAACG
 A C G T A C G T A C G T G T A C C G T A A T G C A G T C G C T A A G C T G A C T A C T G A C T G C G T A C T G A A T G C A C G T
A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A T C G A G A T C T A C G