Information for 11-CTCCCCTGCTGCCAGC (Motif 19)

A G T C A G C T A G T C A G T C A G T C A G T C A C G T A C T G A G T C C G A T A C T G A G T C A G T C G T C A A T C G A G T C
Reverse Opposite:
A C T G T A G C A C G T A C T G A C T G A G T C C G T A A C T G A G T C C G T A A C T G A C T G C T A G A C T G T C G A A C T G
p-value:1e-10
log p-value:-2.331e+01
Information Content per bp:1.924
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif4.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets47.8 +/- 25.0bp
Average Position of motif in Background66.3 +/- 21.6bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CTCCCCTGCTGCCAGC
-CCCCCTGCTGTG---
 A G T C A G C T A G T C A G T C A G T C A G T C A C G T A C T G A G T C C G A T A C T G A G T C A G T C G T C A A T C G A G T C
A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:2
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CTCCCCTGCTGCCAGC
-TCNCCTGCTGNGNNN
 A G T C A G C T A G T C A G T C A G T C A G T C A C G T A C T G A G T C C G A T A C T G A G T C A G T C G T C A A T C G A G T C
A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:3
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CTCCCCTGCTGCCAGC
GGCCYCCTGCTGDGH--
 A C G T A G T C A G C T A G T C A G T C A G T C A G T C A C G T A C T G A G T C C G A T A C T G A G T C A G T C G T C A A T C G A G T C
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CTCCCCTGCTGCCAGC
-TNTCCTGCTGTGNNG
 A G T C A G C T A G T C A G T C A G T C A G T C A C G T A C T G A G T C C G A T A C T G A G T C A G T C G T C A A T C G A G T C
A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

PB0207.1_Zic3_2/Jaspar

Match Rank:5
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CTCCCCTGCTGCCAGC
-NNTCCTGCTGTGNNN
 A G T C A G C T A G T C A G T C A G T C A G T C A C G T A C T G A G T C C G A T A C T G A G T C A G T C G T C A A T C G A G T C
A C G T G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

ZEB1/MA0103.2/Jaspar

Match Rank:6
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CTCCCCTGCTGCCAGC
CCTCACCTG--------
 A C G T A G T C A G C T A G T C A G T C A G T C A G T C A C G T A C T G A G T C C G A T A C T G A G T C A G T C G T C A A T C G A G T C
T G A C A G T C C G A T A G T C C G T A A G T C A G T C A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:7
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CTCCCCTGCTGCCAGC
GACCCCCCGCTGCGC--
 A C G T A G T C A G C T A G T C A G T C A G T C A G T C A C G T A C T G A G T C C G A T A C T G A G T C A G T C G T C A A T C G A G T C
A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:8
Score:0.56
Offset:4
Orientation:forward strand
Alignment:CTCCCCTGCTGCCAGC
----CCTGCTGAGH--
 A G T C A G C T A G T C A G T C A G T C A G T C A C G T A C T G A G T C C G A T A C T G A G T C A G T C G T C A A T C G A G T C
A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:9
Score:0.55
Offset:4
Orientation:forward strand
Alignment:CTCCCCTGCTGCCAGC
----GGTGYTGACAGS
 A G T C A G C T A G T C A G T C A G T C A G T C A C G T A C T G A G T C C G A T A C T G A G T C A G T C G T C A A T C G A G T C
A C G T A C G T A C G T A C G T T C A G A T C G G A C T A C T G G A C T C A G T C T A G C G T A G T A C C G T A C T A G A T C G

Hic1/MA0739.1/Jaspar

Match Rank:10
Score:0.55
Offset:8
Orientation:forward strand
Alignment:CTCCCCTGCTGCCAGC-
--------ATGCCAACC
 A G T C A G C T A G T C A G T C A G T C A G T C A C G T A C T G A G T C C G A T A C T G A G T C A G T C G T C A A T C G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C