Information for 10-GRGTCATAGCCACTCA (Motif 17)

A T C G T C A G C T A G C G A T A G T C T C G A G A C T C G T A C A T G A G T C G A T C G T C A A G T C G C A T A G T C C G T A
Reverse Opposite:
C G A T C T A G C G T A T A C G A C G T C T A G A C T G G T A C C G A T C T G A A G C T A C T G C G T A A G T C A G T C A T G C
p-value:1e-10
log p-value:-2.475e+01
Information Content per bp:1.674
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.44%
Number of Background Sequences with motif35.9
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets50.7 +/- 22.8bp
Average Position of motif in Background51.2 +/- 24.1bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:1
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GRGTCATAGCCACTCA
NAGGTCANTGACCT---
 A C G T A T C G T C A G C T A G C G A T A G T C T C G A G A C T C G T A C A T G A G T C G A T C G T C A A G T C G C A T A G T C C G T A
T C A G T C G A C T A G C A T G A C G T A T G C T C G A G A C T A G C T T A C G T G C A G T A C G T A C A G C T A C G T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.53
Offset:4
Orientation:forward strand
Alignment:GRGTCATAGCCACTCA
----ACTAGCCAATCA
 A T C G T C A G C T A G C G A T A G T C T C G A G A C T C G T A C A T G A G T C G A T C G T C A A G T C G C A T A G T C C G T A
A C G T A C G T A C G T A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:GRGTCATAGCCACTCA
-GGACACACCCCC---
 A T C G T C A G C T A G C G A T A G T C T C G A G A C T C G T A C A T G A G T C G A T C G T C A A G T C G C A T A G T C C G T A
A C G T T C A G T A C G G T C A A G T C G T C A A G T C C T G A A G T C G T A C G A T C G T A C A G T C A C G T A C G T A C G T

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:4
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:GRGTCATAGCCACTCA
--GTCATN--------
 A T C G T C A G C T A G C G A T A G T C T C G A G A C T C G T A C A T G A G T C G A T C G T C A A G T C G C A T A G T C C G T A
A C G T A C G T T C A G A C G T G A T C C G T A A G C T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0118.1_Esrra_2/Jaspar

Match Rank:5
Score:0.52
Offset:-6
Orientation:forward strand
Alignment:------GRGTCATAGCCACTCA
GGCGAGGGGTCAAGGGC-----
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G T C A G C T A G C G A T A G T C T C G A G A C T C G T A C A T G A G T C G A T C G T C A A G T C G C A T A G T C C G T A
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C A C G T A C G T A C G T A C G T A C G T

PB0057.1_Rxra_1/Jaspar

Match Rank:6
Score:0.52
Offset:-6
Orientation:reverse strand
Alignment:------GRGTCATAGCCACTCA
NTNNNGGGGTCANGNNN-----
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G T C A G C T A G C G A T A G T C T C G A G A C T C G T A C A T G A G T C G A T C G T C A A G T C G C A T A G T C C G T A
T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A A C G T A C G T A C G T A C G T A C G T

PB0157.1_Rara_2/Jaspar

Match Rank:7
Score:0.51
Offset:-6
Orientation:forward strand
Alignment:------GRGTCATAGCCACTCA
AGAGCGGGGTCAAGTA------
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G T C A G C T A G C G A T A G T C T C G A G A C T C G T A C A T G A G T C G A T C G T C A A G T C G C A T A G T C C G T A
G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A A C G T A C G T A C G T A C G T A C G T A C G T

BATF::JUN/MA0462.1/Jaspar

Match Rank:8
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-GRGTCATAGCCACTCA
TGAGTCATTTC------
 A C G T A T C G T C A G C T A G C G A T A G T C T C G A G A C T C G T A C A T G A G T C G A T C G T C A A G T C G C A T A G T C C G T A
C G A T A C T G C G T A A T C G A C G T G T A C C G T A C A G T G C A T G A C T G A T C A C G T A C G T A C G T A C G T A C G T A C G T

Pax2/MA0067.1/Jaspar

Match Rank:9
Score:0.50
Offset:1
Orientation:forward strand
Alignment:GRGTCATAGCCACTCA
-AGTCACGC-------
 A T C G T C A G C T A G C G A T A G T C T C G A G A C T C G T A C A T G A G T C G A T C G T C A A G T C G C A T A G T C C G T A
A C G T G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:10
Score:0.50
Offset:5
Orientation:forward strand
Alignment:GRGTCATAGCCACTCA-
-----SCTGTCAVTCAV
 A T C G T C A G C T A G C G A T A G T C T C G A G A C T C G T A C A T G A G T C G A T C G T C A A G T C G C A T A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A