Information for 2-CACAAAGCAA (Motif 15)

A G T C T C G A A G T C C G T A C T G A C G T A C A T G T G A C C G T A T G C A
Reverse Opposite:
A C G T G C A T A C T G G T A C A C G T A G C T C G A T C T A G A G C T C T A G
p-value:1e-11
log p-value:-2.548e+01
Information Content per bp:1.833
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif2.09%
Number of Background Sequences with motif98.4
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets44.8 +/- 25.9bp
Average Position of motif in Background48.6 +/- 28.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX10/MA0442.1/Jaspar

Match Rank:1
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:CACAAAGCAA
-ACAAAG---
 A G T C T C G A A G T C C G T A C T G A C G T A C A T G T G A C C G T A T G C A
A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:2
Score:0.73
Offset:-5
Orientation:forward strand
Alignment:-----CACAAAGCAA-
AAACAGACAAAGGAAT
 A C G T A C G T A C G T A C G T A C G T A G T C T C G A A G T C C G T A C T G A C G T A C A T G T G A C C G T A T G C A A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:3
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--CACAAAGCAA
VRRACAAWGG--
 A C G T A C G T A G T C T C G A A G T C C G T A C T G A C G T A C A T G T G A C C G T A T G C A
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:4
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CACAAAGCAA
AAAACAAAGG--
 A C G T A C G T A G T C T C G A A G T C C G T A C T G A C G T A C A T G T G A C C G T A T G C A
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:5
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CACAAAGCAA
GGAACAAAGR--
 A C G T A C G T A G T C T C G A A G T C C G T A C T G A C G T A C A T G T G A C C G T A T G C A
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:6
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CACAAAGCAA---
-ACAAAGGNBCCT
 A G T C T C G A A G T C C G T A C T G A C G T A C A T G T G A C C G T A T G C A A C G T A C G T A C G T
A C G T G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:7
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CACAAAGCAA
RACAAWGG--
 A G T C T C G A A G T C C G T A C T G A C G T A C A T G T G A C C G T A T G C A
T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:8
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----CACAAAGCAA--
AGAAGAACAAAGGACTA
 A C G T A C G T A C G T A C G T A C G T A G T C T C G A A G T C C G T A C T G A C G T A C A T G T G A C C G T A T G C A A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CACAAAGCAA----
CCGCATAGCAACGGA
 A C G T A G T C T C G A A G T C C G T A C T G A C G T A C A T G T G A C C G T A T G C A A C G T A C G T A C G T A C G T
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

PB0061.1_Sox11_1/Jaspar

Match Rank:10
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----CACAAAGCAA--
ATAAGAACAAAGGACTA
 A C G T A C G T A C G T A C G T A C G T A G T C T C G A A G T C C G T A C T G A C G T A C A T G T G A C C G T A T G C A A C G T A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A