Information for 1-AGCTAAGTAA (Motif 7)

C G T A A T C G A T G C G C A T T C G A C G T A C A T G A G C T G C T A C G T A
Reverse Opposite:
G C A T C G A T C T G A G T A C A C G T A G C T C G T A A T C G A T G C G C A T
p-value:1e-11
log p-value:-2.707e+01
Information Content per bp:1.719
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.83%
Number of Background Sequences with motif192.4
Percentage of Background Sequences with motif0.39%
Average Position of motif in Targets40.3 +/- 26.1bp
Average Position of motif in Background51.4 +/- 27.3bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POU6F2/MA0793.1/Jaspar

Match Rank:1
Score:0.73
Offset:0
Orientation:forward strand
Alignment:AGCTAAGTAA
AGCTCATTAT
 C G T A A T C G A T G C G C A T T C G A C G T A C A T G A G C T G C T A C G T A
C T G A T A C G G A T C C A G T G T A C G T C A A G C T A C G T G C T A G C A T

PH0151.1_Pou6f1_1/Jaspar

Match Rank:2
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---AGCTAAGTAA----
NNNACCTCATTATCNTN
 A C G T A C G T A C G T C G T A A T C G A T G C G C A T T C G A C G T A C A T G A G C T G C T A C G T A A C G T A C G T A C G T A C G T
C A T G G A T C G T C A C G T A T A C G G T A C A C G T G T A C C G T A C G A T C G A T C G T A C G A T A T G C A C T G C G A T A G T C

PH0045.1_Hoxa1/Jaspar

Match Rank:3
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---AGCTAAGTAA---
CTGAGCTAATTACCGT
 A C G T A C G T A C G T C G T A A T C G A T G C G C A T T C G A C G T A C A T G A G C T G C T A C G T A A C G T A C G T A C G T
A G T C G A C T C T A G C T G A T C A G A T G C G A C T T G C A C G T A C G A T A C G T C T G A T G A C A G T C A C T G A G C T

PH0074.1_Hoxd1/Jaspar

Match Rank:4
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---AGCTAAGTAA----
NNNAGCTAATTAGCTTA
 A C G T A C G T A C G T C G T A A T C G A T G C G C A T T C G A C G T A C A T G A G C T G C T A C G T A A C G T A C G T A C G T A C G T
C G A T G T C A G T A C T G C A T C A G A G T C G A C T T G C A C G T A C G A T A C G T C T G A T C A G A G C T C G A T A G C T G C T A

LHX2/MA0700.1/Jaspar

Match Rank:5
Score:0.68
Offset:1
Orientation:forward strand
Alignment:AGCTAAGTAA-
-ACTAATTAAC
 C G T A A T C G A T G C G C A T T C G A C G T A C A T G A G C T G C T A C G T A A C G T
A C G T T C G A A G T C G A C T G T C A C T G A A C G T A C G T C T G A C T G A A T G C

PH0001.1_Alx3/Jaspar

Match Rank:6
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---AGCTAAGTAA----
NTNAGCTAATTAGTTNA
 A C G T A C G T A C G T C G T A A T C G A T G C G C A T T C G A C G T A C A T G A G C T G C T A C G T A A C G T A C G T A C G T A C G T
A G T C C G A T A T G C T C G A C T A G G A T C A G C T G T C A C T G A A G C T A C G T C T G A C T A G A G C T C G A T A G C T G C T A

PB0031.1_Hoxa3_1/Jaspar

Match Rank:7
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---AGCTAAGTAA-
TGGAGGTAATTAAC
 A C G T A C G T A C G T C G T A A T C G A T G C G C A T T C G A C G T A C A T G A G C T G C T A C G T A A C G T
C A G T A C T G A T C G G C T A C T A G A T C G G A C T G T C A C G T A A C G T A C G T C T G A T C G A A G T C

PH0155.1_Prrx2/Jaspar

Match Rank:8
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--AGCTAAGTAA-----
AAAGCTAATTAGCGAAA
 A C G T A C G T C G T A A T C G A T G C G C A T T C G A C G T A C A T G A G C T G C T A C G T A A C G T A C G T A C G T A C G T A C G T
C G T A T G C A G T C A T C A G G A T C A G C T C T G A C G T A G A C T A G C T C T G A C T A G A G T C C A T G C T G A C G T A C T G A

LBX1/MA0618.1/Jaspar

Match Rank:9
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:AGCTAAGTAA
--CTAATTAA
 C G T A A T C G A T G C G C A T T C G A C G T A C A T G A G C T G C T A C G T A
A C G T A C G T T A G C A G C T G C T A C T G A A C G T A C G T C T G A G C T A

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:10
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:AGCTAAGTAA
-NCTAATTA-
 C G T A A T C G A T G C G C A T T C G A C G T A C A T G A G C T G C T A C G T A
A C G T T A C G A G T C A G C T G T C A C G T A A C G T A C G T C T G A A C G T