Information for 21-CTGGGAGCCTCCHAGA (Motif 44)

A G T C A C G T C A T G A C T G A C T G G T C A A C T G A G T C A G T C A C G T A G T C A G T C G A T C C G T A A C T G C T G A
Reverse Opposite:
A G C T A G T C A C G T C A T G A C T G A C T G C G T A A C T G C T A G A G T C A C G T A G T C A G T C G T A C C G T A A C T G
p-value:1e-6
log p-value:-1.423e+01
Information Content per bp:1.865
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.39%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets41.3 +/- 20.2bp
Average Position of motif in Background15.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CTGGGAGCCTCCHAGA
-TGGCAGNCTGCCAG-
 A G T C A C G T C A T G A C T G A C T G G T C A A C T G A G T C A G T C A C G T A G T C A G T C G A T C C G T A A C T G C T G A
A C G T C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T

PB0201.1_Zfp281_2/Jaspar

Match Rank:2
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----CTGGGAGCCTCCHAGA
NNNATTGGGGGTNTCCT---
 A C G T A C G T A C G T A C G T A G T C A C G T C A T G A C T G A C T G G T C A A C T G A G T C A G T C A C G T A G T C A G T C G A T C C G T A A C T G C T G A
A G T C G C T A G C T A G C T A C G A T C G A T A C T G A C T G A C T G C A T G A C T G A G C T G T A C G C A T G T A C G T A C G C A T A C G T A C G T A C G T

PB0203.1_Zfp691_2/Jaspar

Match Rank:3
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---CTGGGAGCCTCCHAGA
NTNNNAGGAGTCTCNTN--
 A C G T A C G T A C G T A G T C A C G T C A T G A C T G A C T G G T C A A C T G A G T C A G T C A C G T A G T C A G T C G A T C C G T A A C T G C T G A
A T C G C A G T A C G T G C T A C T A G C T G A A C T G A C T G C G T A A T C G A G C T G T A C G C A T T G A C T A C G G A C T G T C A A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:4
Score:0.52
Offset:2
Orientation:forward strand
Alignment:CTGGGAGCCTCCHAGA
--GGGAATTTCC----
 A G T C A C G T C A T G A C T G A C T G G T C A A C T G A G T C A G T C A C G T A G T C A G T C G A T C C G T A A C T G C T G A
A C G T A C G T A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T A C G T A C G T A C G T

PB0052.1_Plagl1_1/Jaspar

Match Rank:5
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--CTGGGAGCCTCCHAGA
NNNGGGGCGCCCCCNN--
 A C G T A C G T A G T C A C G T C A T G A C T G A C T G G T C A A C T G A G T C A G T C A C G T A G T C A G T C G A T C C G T A A C T G C T G A
A T G C A G C T T G C A C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C G A T C C T G A T G C A A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:6
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:CTGGGAGCCTCCHAGA
--GGGAATTTCC----
 A G T C A C G T C A T G A C T G A C T G G T C A A C T G A G T C A G T C A C G T A G T C A G T C G A T C C G T A A C T G C T G A
A C G T A C G T A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T A C G T A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:7
Score:0.50
Offset:1
Orientation:forward strand
Alignment:CTGGGAGCCTCCHAGA
-NGGGGATTTCCC---
 A G T C A C G T C A T G A C T G A C T G G T C A A C T G A G T C A G T C A C G T A G T C A G T C G A T C C G T A A C T G C T G A
A C G T C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C A C G T A C G T A C G T

Stat5a::Stat5b/MA0519.1/Jaspar

Match Rank:8
Score:0.50
Offset:6
Orientation:forward strand
Alignment:CTGGGAGCCTCCHAGA-
------ATTTCCAAGAA
 A G T C A C G T C A T G A C T G A C T G G T C A A C T G A G T C A G T C A C G T A G T C A G T C G A T C C G T A A C T G C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A A G C T A C G T A G C T A G T C G A T C G T C A C T G A A C T G G C T A C T G A

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.49
Offset:-3
Orientation:forward strand
Alignment:---CTGGGAGCCTCCHAGA
WDNCTGGGCA---------
 A C G T A C G T A C G T A G T C A C G T C A T G A C T G A C T G G T C A A C T G A G T C A G T C A C G T A G T C A G T C G A T C C G T A A C T G C T G A
G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.49
Offset:0
Orientation:reverse strand
Alignment:CTGGGAGCCTCCHAGA
TTGGCANNNTGCCAAG
 A G T C A C G T C A T G A C T G A C T G G T C A A C T G A G T C A G T C A C G T A G T C A G T C G A T C C G T A A C T G C T G A
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G