Information for 16-GAGGGCAGGGCCASGC (Motif 33)

A C T G C G T A A C T G T A C G C T A G A T G C G T C A C T A G A C T G A T C G A G T C T A G C C G T A A T G C A C T G A G T C
Reverse Opposite:
A C T G A G T C A T C G A C G T A T C G C T A G A T G C G T A C A G T C A C G T A T C G A G T C A G T C A G T C C G A T A G T C
p-value:1e-8
log p-value:-1.927e+01
Information Content per bp:1.796
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.90%
Number of Background Sequences with motif14.4
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets50.3 +/- 24.3bp
Average Position of motif in Background46.6 +/- 29.5bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:1
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GAGGGCAGGGCCASGC
-AGGTCAAGGTCA---
 A C T G C G T A A C T G T A C G C T A G A T G C G T C A C T A G A C T G A T C G A G T C T A G C C G T A A T G C A C T G A G T C
A C G T C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A A C G T A C G T A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:2
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GAGGGCAGGGCCASGC
AAGTTCAAGGTCAGC-
 A C T G C G T A A C T G T A C G C T A G A T G C G T C A C T A G A C T G A T C G A G T C T A G C C G T A A T G C A C T G A G T C
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C A C G T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:3
Score:0.55
Offset:11
Orientation:reverse strand
Alignment:GAGGGCAGGGCCASGC-
-----------CACGCA
 A C T G C G T A A C T G T A C G C T A G A T G C G T C A C T A G A C T G A T C G A G T C T A G C C G T A A T G C A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A G T A C C T A G G T A C C T G A

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:4
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GAGGGCAGGGCCASGC
-AGGTCAAGGTCA---
 A C T G C G T A A C T G T A C G C T A G A T G C G T C A C T A G A C T G A T C G A G T C T A G C C G T A A T G C A C T G A G T C
A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A A C G T A C G T A C G T

PB0157.1_Rara_2/Jaspar

Match Rank:5
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GAGGGCAGGGCCASGC-
-AGAGCGGGGTCAAGTA
 A C T G C G T A A C T G T A C G C T A G A T G C G T C A C T A G A C T G A T C G A G T C T A G C C G T A A T G C A C T G A G T C A C G T
A C G T G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A

Klf12/MA0742.1/Jaspar

Match Rank:6
Score:0.53
Offset:8
Orientation:forward strand
Alignment:GAGGGCAGGGCCASGC-------
--------GACCACGCCCTTATT
 A C T G C G T A A C T G T A C G C T A G A T G C G T C A C T A G A C T G A T C G A G T C T A G C C G T A A T G C A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G T C G A G T A C T A G C T G C A G T A C C T A G A G T C A G T C A G T C G C A T G C A T G C T A G C A T G C A T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:7
Score:0.53
Offset:5
Orientation:forward strand
Alignment:GAGGGCAGGGCCASGC
-----CAAGGHCANV-
 A C T G C G T A A C T G T A C G C T A G A T G C G T C A C T A G A C T G A T C G A G T C T A G C C G T A A T G C A C T G A G T C
A C G T A C G T A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T

EGR2/MA0472.2/Jaspar

Match Rank:8
Score:0.53
Offset:6
Orientation:forward strand
Alignment:GAGGGCAGGGCCASGC-
------ACGCCCACGCA
 A C T G C G T A A C T G T A C G C T A G A T G C G T C A C T A G A C T G A T C G A G T C T A G C C G T A A T G C A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G T C A A G T C C T A G A G T C T G A C A G T C T G C A A G T C C A T G A G T C C T G A

PB0180.1_Sp4_2/Jaspar

Match Rank:9
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:GAGGGCAGGGCCASGC-----
------NNGGCCACGCCTTTN
 A C T G C G T A A C T G T A C G C T A G A T G C G T C A C T A G A C T G A T C G A G T C T A G C C G T A A T G C A C T G A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G T A C C A G T C T A G C T A G T G A C G A T C T G C A T G A C A C T G T G A C T A G C A G C T G C A T G C A T T C A G

Sp1(Zf)/Promoter/Homer

Match Rank:10
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:GAGGGCAGGGCCASGC
GGGGGCGGGGCC----
 A C T G C G T A A C T G T A C G C T A G A T G C G T C A C T A G A C T G A T C G A G T C T A G C C G T A A T G C A C T G A G T C
T C A G C A T G C T A G A C T G A C T G A G T C A C T G A C T G C T A G T A C G A G T C A T G C A C G T A C G T A C G T A C G T