Information for 1-AGSSAAGGCRGCS (Motif 1)

C G T A A C T G A T C G A T C G C G T A C G T A C T A G A C T G A G T C C T G A A C T G A T G C A T G C
Reverse Opposite:
A T C G A T C G A G T C A G C T A C T G A G T C A G T C A C G T A C G T A T G C A T G C A G T C A C G T
p-value:1e-14
log p-value:-3.275e+01
Information Content per bp:1.876
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.03%
Number of Background Sequences with motif4.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets47.5 +/- 17.4bp
Average Position of motif in Background51.6 +/- 23.5bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-AGSSAAGGCRGCS
AAGGCAAGTGT---
 A C G T C G T A A C T G A T C G A T C G C G T A C G T A C T A G A C T G A G T C C T G A A C T G A T G C A T G C
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T A C G T

PB0076.1_Sp4_1/Jaspar

Match Rank:2
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:AGSSAAGGCRGCS-----
-NNNAAGGGGGCGGGNNN
 C G T A A C T G A T C G A T C G C G T A C G T A C T A G A C T G A G T C C T G A A C T G A T G C A T G C A C G T A C G T A C G T A C G T A C G T
A C G T T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-AGSSAAGGCRGCS
TTGCCATGGCAACN
 A C G T C G T A A C T G A T C G A T C G C G T A C G T A C T A G A C T G A G T C C T G A A C T G A T G C A T G C
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

PB0124.1_Gabpa_2/Jaspar

Match Rank:4
Score:0.50
Offset:-5
Orientation:reverse strand
Alignment:-----AGSSAAGGCRGCS
NNNNGGGGGAAGANGG--
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G A T C G A T C G C G T A C G T A C T A G A C T G A G T C C T G A A C T G A T G C A T G C
C T A G A C G T A T C G T C G A C T A G C A T G T A C G C T A G C T A G C T G A C G T A C T A G T G C A G A T C C T A G A C T G A C G T A C G T

Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer

Match Rank:5
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-AGSSAAGGCRGCS
CAGATAAGGN----
 A C G T C G T A A C T G A T C G A T C G C G T A C G T A C T A G A C T G A G T C C T G A A C T G A T G C A T G C
T A G C G C T A A C T G C G T A A C G T C G T A C G T A T A C G T C A G T C G A A C G T A C G T A C G T A C G T

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.49
Offset:-3
Orientation:reverse strand
Alignment:---AGSSAAGGCRGCS
GAAAGTGAAAGT----
 A C G T A C G T A C G T C G T A A C T G A T C G A T C G C G T A C G T A C T A G A C T G A G T C C T G A A C T G A T G C A T G C
T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T A C G T A C G T A C G T A C G T

YY2/MA0748.1/Jaspar

Match Rank:7
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:AGSSAAGGCRGCS
--TAATGGCGGNC
 C G T A A C T G A T C G A T C G C G T A C G T A C T A G A C T G A G T C C T G A A C T G A T G C A T G C
A C G T A C G T G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C

YY1(Zf)/Promoter/Homer

Match Rank:8
Score:0.49
Offset:0
Orientation:forward strand
Alignment:AGSSAAGGCRGCS
CAAGATGGCGGC-
 C G T A A C T G A T C G A T C G C G T A C G T A C T A G A C T G A G T C C T G A A C T G A T G C A T G C
T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C A C G T

POL008.1_DCE_S_I/Jaspar

Match Rank:9
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:AGSSAAGGCRGCS
--NGAAGC-----
 C G T A A C T G A T C G A T C G C G T A C G T A C T A G A C T G A G T C C T G A A C T G A T G C A T G C
A C G T A C G T T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T A C G T A C G T

POL006.1_BREu/Jaspar

Match Rank:10
Score:0.49
Offset:6
Orientation:reverse strand
Alignment:AGSSAAGGCRGCS-
------GGCGCGCT
 C G T A A C T G A T C G A T C G C G T A C G T A C T A G A C T G A G T C C T G A A C T G A T G C A T G C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T