Information for 2-BGCVGCCATBTTK (Motif 2)

A T G C C T A G A G T C T A G C A C T G A G T C A G T C C G T A A C G T A G C T C G A T A G C T C A T G
Reverse Opposite:
G T A C C T G A C G T A T C G A C G T A A C G T A C T G A C T G A G T C A T C G A C T G A G T C T A C G
p-value:1e-42
log p-value:-9.752e+01
Information Content per bp:1.752
Number of Target Sequences with motif75.0
Percentage of Target Sequences with motif8.47%
Number of Background Sequences with motif458.2
Percentage of Background Sequences with motif1.03%
Average Position of motif in Targets47.7 +/- 24.0bp
Average Position of motif in Background55.0 +/- 32.4bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.93
Offset:1
Orientation:reverse strand
Alignment:BGCVGCCATBTTK
-GCNGCCATCTTG
 A T G C C T A G A G T C T A G C A C T G A G T C A G T C C G T A A C G T A G C T C G A T A G C T C A T G
A C G T C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G

YY1(Zf)/Promoter/Homer

Match Rank:2
Score:0.92
Offset:1
Orientation:reverse strand
Alignment:BGCVGCCATBTTK
-GCCGCCATCTTG
 A T G C C T A G A G T C T A G C A C T G A G T C A G T C C G T A A C G T A G C T C G A T A G C T C A T G
A C G T C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G

YY2/MA0748.1/Jaspar

Match Rank:3
Score:0.82
Offset:0
Orientation:forward strand
Alignment:BGCVGCCATBTTK
GTCCGCCATTA--
 A T G C C T A G A G T C T A G C A C T G A G T C A G T C C G T A A C G T A G C T C G A T A G C T C A T G
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:4
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----BGCVGCCATBTTK
TACGCCCCGCCACTCTG
 A C G T A C G T A C G T A C G T A T G C C T A G A G T C T A G C A C T G A G T C A G T C C G T A A C G T A G C T C G A T A G C T C A T G
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.60
Offset:3
Orientation:forward strand
Alignment:BGCVGCCATBTTK
---GGCCATTAAC
 A T G C C T A G A G T C T A G C A C T G A G T C A G T C C G T A A C G T A G C T C G A T A G C T C A T G
A C G T A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

NFIC/MA0161.1/Jaspar

Match Rank:6
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:BGCVGCCATBTTK
---TGCCAA----
 A T G C C T A G A G T C T A G C A C T G A G T C A G T C C G T A A C G T A G C T C G A T A G C T C A T G
A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T

E2F2/MA0864.1/Jaspar

Match Rank:7
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----BGCVGCCATBTTK
AAAATGGCGCCATTTT-
 A C G T A C G T A C G T A C G T A T G C C T A G A G T C T A G C A C T G A G T C A G T C C G T A A C G T A G C T C G A T A G C T C A T G
C G T A C G T A C G T A C G T A C G A T A T C G A C T G A G T C A C T G A G T C T A G C G C T A G C A T C G A T C G A T C G A T A C G T

E2F3/MA0469.2/Jaspar

Match Rank:8
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----BGCVGCCATBTTK
AAAAATGGCGCCATTTTT
 A C G T A C G T A C G T A C G T A C G T A T G C C T A G A G T C T A G C A C T G A G T C A G T C C G T A A C G T A G C T C G A T A G C T C A T G
T C G A T C G A C G T A G C T A C G T A C A G T A T C G A C T G A T G C A C T G A T G C T A G C G T C A G C A T C G A T G C A T A G C T G A C T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:9
Score:0.58
Offset:4
Orientation:forward strand
Alignment:BGCVGCCATBTTK-
----GCCATCTGTT
 A T G C C T A G A G T C T A G C A C T G A G T C A G T C C G T A A C G T A G C T C G A T A G C T C A T G A C G T
A C G T A C G T A C G T A C G T T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T

NFIX/MA0671.1/Jaspar

Match Rank:10
Score:0.57
Offset:1
Orientation:forward strand
Alignment:BGCVGCCATBTTK
-CGTGCCAAG---
 A T G C C T A G A G T C T A G C A C T G A G T C A G T C C G T A A C G T A G C T C G A T A G C T C A T G
A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T