Information for 23-CGCGCAACAA (Motif 33)

A T G C A T C G A T G C T A C G A G T C C T G A C G T A A G T C C G T A C T G A
Reverse Opposite:
A G C T A C G T A C T G A C G T A G C T A C T G A G T C A T C G A T G C A T C G
p-value:1e-8
log p-value:-1.905e+01
Information Content per bp:1.861
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.14%
Number of Background Sequences with motif9.3
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets57.6 +/- 26.0bp
Average Position of motif in Background30.6 +/- 26.8bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0011.1_HMG_class/Jaspar

Match Rank:1
Score:0.69
Offset:5
Orientation:reverse strand
Alignment:CGCGCAACAA-
-----AACAAT
 A T G C A T C G A T G C T A C G A G T C C T G A C G T A A G T C C G T A C T G A A C G T
A C G T A C G T A C G T A C G T A C G T T C G A C G T A G A T C C T G A T G C A C G A T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:2
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:CGCGCAACAA---
---RNAACAATGG
 A T G C A T C G A T G C T A C G A G T C C T G A C G T A A G T C C G T A C T G A A C G T A C G T A C G T
A C G T A C G T A C G T T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G

PB0120.1_Foxj1_2/Jaspar

Match Rank:3
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CGCGCAACAA---
ATGTCACAACAACAC
 A C G T A C G T A T G C A T C G A T G C T A C G A G T C C T G A C G T A A G T C C G T A C T G A A C G T A C G T A C G T
C G T A A G C T T C A G A C G T T A G C T C G A A G T C C T G A G T C A T G A C C G T A C T G A A T G C T C G A G T A C

Sox5/MA0087.1/Jaspar

Match Rank:4
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:CGCGCAACAA-
----NAACAAT
 A T G C A T C G A T G C T A C G A G T C C T G A C G T A A G T C C G T A C T G A A C G T
A C G T A C G T A C G T A C G T G C A T C G T A C T G A A G T C C G T A G T C A A C G T

PB0183.1_Sry_2/Jaspar

Match Rank:5
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CGCGCAACAA------
TCACGGAACAATAGGTG
 A C G T A T G C A T C G A T G C T A C G A G T C C T G A C G T A A G T C C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T
G A C T G A T C C G T A G T A C C A T G T C A G T G C A C G T A A G T C C T G A C G T A G C A T C T G A C T A G T C A G G A C T T A C G

PB0173.1_Sox21_2/Jaspar

Match Rank:6
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CGCGCAACAA------
NNNNNGAACAATTGANN
 A C G T A T G C A T C G A T G C T A C G A G T C C T G A C G T A A G T C C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T
A G C T G T C A C T A G G T A C A C T G T A C G T C G A C G T A A T G C C G T A T C G A G C A T C G A T T A C G T C G A A G C T A C G T

PB0121.1_Foxj3_2/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CGCGCAACAA----
AACACCAAAACAAAGGA
 A C G T A C G T A C G T A T G C A T C G A T G C T A C G A G T C C T G A C G T A A G T C C G T A C T G A A C G T A C G T A C G T A C G T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

PB0070.1_Sox30_1/Jaspar

Match Rank:8
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CGCGCAACAA-------
-AATGAACAATGGAATT
 A T G C A T C G A T G C T A C G A G T C C T G A C G T A A G T C C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C T G A G C A T C A G T A T C G T C G A C G T A A G T C G C T A C T G A C G A T C A T G T C A G G C T A G T C A G A C T G A C T

SCRT2/MA0744.1/Jaspar

Match Rank:9
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CGCGCAACAA----
-ATGCAACAGGTGG
 A T G C A T C G A T G C T A C G A G T C C T G A C G T A A G T C C G T A C T G A A C G T A C G T A C G T A C G T
A C G T T C G A G C A T A C T G G T A C T G C A C G T A G T A C G T C A T C A G A T C G G C A T C A T G A T C G

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:10
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CGCGCAACAA---
---VRRACAAWGG
 A T G C A T C G A T G C T A C G A G T C C T G A C G T A A G T C C G T A C T G A A C G T A C G T A C G T
A C G T A C G T A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G