Information for 12-YGGCSGCCATTTT (Motif 14)

A G T C A T C G A T C G G T A C T A G C T C A G A T G C A G T C G T C A A C G T A G C T A G C T A C G T
Reverse Opposite:
G T C A T C G A T C G A G T C A C A G T C T A G A T C G A G T C A T C G C A T G A T G C T A G C T C A G
p-value:1e-13
log p-value:-3.027e+01
Information Content per bp:1.670
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif3.76%
Number of Background Sequences with motif80.4
Percentage of Background Sequences with motif0.74%
Average Position of motif in Targets52.4 +/- 28.0bp
Average Position of motif in Background60.7 +/- 29.7bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.88
Offset:2
Orientation:reverse strand
Alignment:YGGCSGCCATTTT-
--GCNGCCATCTTG
 A G T C A T C G A T C G G T A C T A G C T C A G A T G C A G T C G T C A A C G T A G C T A G C T A C G T A C G T
A C G T A C G T C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G

YY1(Zf)/Promoter/Homer

Match Rank:2
Score:0.85
Offset:2
Orientation:reverse strand
Alignment:YGGCSGCCATTTT-
--GCCGCCATCTTG
 A G T C A T C G A T C G G T A C T A G C T C A G A T G C A G T C G T C A A C G T A G C T A G C T A C G T A C G T
A C G T A C G T C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G

YY2/MA0748.1/Jaspar

Match Rank:3
Score:0.75
Offset:1
Orientation:forward strand
Alignment:YGGCSGCCATTTT
-GTCCGCCATTA-
 A G T C A T C G A T C G G T A C T A G C T C A G A T G C A G T C G T C A A C G T A G C T A G C T A C G T
A C G T C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T

Sox2/MA0143.3/Jaspar

Match Rank:4
Score:0.63
Offset:6
Orientation:forward strand
Alignment:YGGCSGCCATTTT-
------CCTTTGTT
 A G T C A T C G A T C G G T A C T A G C T C A G A T G C A G T C G T C A A C G T A G C T A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:5
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:YGGCSGCCATTTT--
-----NCCATTGTTY
 A G T C A T C G A T C G G T A C T A G C T C A G A T G C A G T C G T C A A C G T A G C T A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.62
Offset:6
Orientation:forward strand
Alignment:YGGCSGCCATTTT---
------CCATTGTTYB
 A G T C A T C G A T C G G T A C T A G C T C A G A T G C A G T C G T C A A C G T A G C T A G C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:7
Score:0.60
Offset:6
Orientation:forward strand
Alignment:YGGCSGCCATTTT-
------CCWTTGTY
 A G T C A T C G A T C G G T A C T A G C T C A G A T G C A G T C G T C A A C G T A G C T A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.60
Offset:5
Orientation:forward strand
Alignment:YGGCSGCCATTTT--
-----NCCATTGTTC
 A G T C A T C G A T C G G T A C T A G C T C A G A T G C A G T C G T C A A C G T A G C T A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C

PB0164.1_Smad3_2/Jaspar

Match Rank:9
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---YGGCSGCCATTTT-
TACGCCCCGCCACTCTG
 A C G T A C G T A C G T A G T C A T C G A T C G G T A C T A G C T C A G A T G C A G T C G T C A A C G T A G C T A G C T A C G T A C G T
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G

Sox6/MA0515.1/Jaspar

Match Rank:10
Score:0.57
Offset:6
Orientation:forward strand
Alignment:YGGCSGCCATTTT---
------CCATTGTTTT
 A G T C A T C G A T C G G T A C T A G C T C A G A T G C A G T C G T C A A C G T A G C T A G C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T