Information for 22-TGGGGATTACTAG (Motif 42)

A C G T A C T G A C T G A C T G A C T G C G T A A C G T A C G T C G T A A G T C A C G T C G T A A C T G
Reverse Opposite:
A G T C A C G T C G T A A C T G A C G T C G T A C G T A A C G T A G T C A G T C A G T C A G T C C G T A
p-value:1e-3
log p-value:-8.957e+00
Information Content per bp:1.530
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.26%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.2 +/- 21.8bp
Average Position of motif in Background8.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0129.1_Otx1/Jaspar

Match Rank:1
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--TGGGGATTACTAG--
AGAGGGGATTAATTTAT
 A C G T A C G T A C G T A C T G A C T G A C T G A C T G C G T A A C G T A C G T C G T A A G T C A C G T C G T A A C T G A C G T A C G T
C T A G C A T G C G T A C T A G T A C G C T A G C A T G G T C A A C G T C G A T C G T A C G T A G A C T G C A T G A C T G C T A A G C T

PH0130.1_Otx2/Jaspar

Match Rank:2
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--TGGGGATTACTAG--
TGTAGGGATTAATTGTC
 A C G T A C G T A C G T A C T G A C T G A C T G A C T G C G T A A C G T A C G T C G T A A G T C A C G T C G T A A C T G A C G T A C G T
C A G T C T A G C G A T T C G A T C A G T C A G C A T G G T C A C G A T C G A T C G T A C T G A A G C T G A C T C T A G C A G T G A T C

PH0138.1_Pitx2/Jaspar

Match Rank:3
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--TGGGGATTACTAG--
TGAAGGGATTAATCATC
 A C G T A C G T A C G T A C T G A C T G A C T G A C T G C G T A A C G T A C G T C G T A A G T C A C G T C G T A A C T G A C G T A C G T
C A G T C A T G C G T A T C G A T C A G C T A G C A T G G T C A A G C T G A C T C G T A C T G A A G C T G A T C C T G A C G A T G A T C

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:4
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:TGGGGATTACTAG
-NGGGATTA----
 A C G T A C T G A C T G A C T G A C T G C G T A A C G T A C G T C G T A A G T C A C G T C G T A A C T G
A C G T T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T A C G T A C G T A C G T

PITX3/MA0714.1/Jaspar

Match Rank:5
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:TGGGGATTACTAG
--GGGATTANN--
 A C G T A C T G A C T G A C T G A C T G C G T A A C G T A C G T C G T A A G T C A C G T C G T A A C T G
A C G T A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G A C G T A C G T

PH0015.1_Crx/Jaspar

Match Rank:6
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---TGGGGATTACTAG
CGTTGGGGATTAGCCT
 A C G T A C G T A C G T A C G T A C T G A C T G A C T G A C T G C G T A A C G T A C G T C G T A A G T C A C G T C G T A A C T G
A G T C A C T G C G A T C G A T T A C G T A C G C T A G A C T G G T C A A C G T C G A T C G T A C T A G A G T C A T G C C A G T

Pitx1/MA0682.1/Jaspar

Match Rank:7
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:TGGGGATTACTAG
--GGGATTAA---
 A C G T A C T G A C T G A C T G A C T G C G T A A C G T A C G T C G T A A G T C A C G T C G T A A C T G
A C G T A C G T C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A A C G T A C G T A C G T

GSC2/MA0891.1/Jaspar

Match Rank:8
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:TGGGGATTACTAG
-GNGGATTAGN--
 A C G T A C T G A C T G A C T G A C T G C G T A A C G T A C G T C G T A A G T C A C G T C G T A A C T G
A C G T C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G A C G T A C G T

GSC/MA0648.1/Jaspar

Match Rank:9
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:TGGGGATTACTAG
-NNGGATTAGN--
 A C G T A C T G A C T G A C T G A C T G C G T A A C G T A C G T C G T A A G T C A C G T C G T A A C T G
A C G T C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C A C G T A C G T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:10
Score:0.66
Offset:2
Orientation:forward strand
Alignment:TGGGGATTACTAG
--RGGATTAR---
 A C G T A C T G A C T G A C T G A C T G C G T A A C G T A C G T C G T A A G T C A C G T C G T A A C T G
A C G T A C G T T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G A C G T A C G T A C G T