Information for 6-TCKTGAYCWYATTTKC (Motif 15)

A C G T A G T C A C G T A C G T A C T G C G T A G A T C A G T C C G A T A G T C C G T A A C G T A C G T A C G T A C G T A G T C
Reverse Opposite:
A C T G T G C A C G T A C G T A C G T A A C G T C T A G C G T A A C T G C T A G A C G T A G T C C G T A T G A C A C T G C G T A
p-value:1e-11
log p-value:-2.544e+01
Information Content per bp:1.864
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets52.4 +/- 22.7bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:1
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:TCKTGAYCWYATTTKC
---TGACCTARTT---
 A C G T A G T C A C G T A C G T A C T G C G T A G A T C A G T C C G A T A G T C C G T A A C G T A C G T A C G T A C G T A G T C
A C G T A C G T A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:2
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:TCKTGAYCWYATTTKC
--TTGACCTANTTATN
 A C G T A G T C A C G T A C G T A C T G C G T A G A T C A G T C C G A T A G T C C G T A A C G T A C G T A C G T A C G T A G T C
A C G T A C G T A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:3
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:TCKTGAYCWYATTTKC
---TGACCTYA-----
 A C G T A G T C A C G T A C G T A C T G C G T A G A T C A G T C C G A T A G T C C G T A A C G T A C G T A C G T A C G T A G T C
A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:4
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:TCKTGAYCWYATTTKC
---TGACCTTGAT---
 A C G T A G T C A C G T A C G T A C T G C G T A G A T C A G T C C G A T A G T C C G T A A C G T A C G T A C G T A C G T A G T C
A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:5
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:TCKTGAYCWYATTTKC
--GTGACCTT------
 A C G T A G T C A C G T A C G T A C T G C G T A G A T C A G T C C G A T A G T C C G T A A C G T A C G T A C G T A C G T A G T C
A C G T A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T

JUND(var.2)/MA0492.1/Jaspar

Match Rank:6
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:TCKTGAYCWYATTTKC
-NATGACATCATCNNN
 A C G T A G T C A C G T A C G T A C T G C G T A G A T C A G T C C G A T A G T C C G T A A C G T A C G T A C G T A C G T A G T C
A C G T A C T G T C G A A C G T A C T G C T G A A G T C T C G A A C G T G T A C C G T A A G C T A G T C G C A T G A C T G C A T

PB0057.1_Rxra_1/Jaspar

Match Rank:7
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--TCKTGAYCWYATTTKC
TGTCGTGACCCCTTAAT-
 A C G T A C G T A C G T A G T C A C G T A C G T A C T G C G T A G A T C A G T C C G A T A G T C C G T A A C G T A C G T A C G T A C G T A G T C
C A G T A T C G G A C T A G T C C A T G A G C T T C A G G T C A G T A C G T A C A G T C A G T C C G A T G A C T T C G A G T C A A G C T A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:8
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-TCKTGAYCWYATTTKC
CNNTTGACCTTTG----
 A C G T A C G T A G T C A C G T A C G T A C T G C G T A G A T C A G T C C G A T A G T C C G T A A C G T A C G T A C G T A C G T A G T C
G A T C A G T C A G T C C A G T A G C T A C T G C G T A A G T C A T G C A G C T G A C T C G A T C A T G A C G T A C G T A C G T A C G T

Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer

Match Rank:9
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:TCKTGAYCWYATTTKC
--ATGACGTCAYYN--
 A C G T A G T C A C G T A C G T A C T G C G T A G A T C A G T C C G A T A G T C C G T A A C G T A C G T A C G T A C G T A G T C
A C G T A C G T T C G A G C A T A C T G C T G A A G T C T C A G G C A T T G A C C G T A A G C T A G T C T A C G A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:10
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:TCKTGAYCWYATTTKC
---TGACCT-------
 A C G T A G T C A C G T A C G T A C T G C G T A G A T C A G T C C G A T A G T C C G T A A C G T A C G T A C G T A C G T A G T C
A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T