Information for 7-CAGTAATRAA (Motif 5)

G A T C C G T A A T C G A C G T G C T A G T C A A C G T C T G A C T G A C T G A
Reverse Opposite:
A G C T A G C T G A C T C G T A A C G T C G A T C G T A A T G C C G A T C T A G
p-value:1e-10
log p-value:-2.507e+01
Information Content per bp:1.750
Number of Target Sequences with motif36.0
Percentage of Target Sequences with motif4.33%
Number of Background Sequences with motif530.5
Percentage of Background Sequences with motif1.11%
Average Position of motif in Targets47.0 +/- 28.3bp
Average Position of motif in Background51.0 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA10/MA0899.1/Jaspar

Match Rank:1
Score:0.79
Offset:1
Orientation:forward strand
Alignment:CAGTAATRAA--
-GGTAATAAAAA
 G A T C C G T A A T C G A C G T G C T A G T C A A C G T C T G A C T G A C T G A A C G T A C G T
A C G T C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A

MEOX2/MA0706.1/Jaspar

Match Rank:2
Score:0.79
Offset:1
Orientation:forward strand
Alignment:CAGTAATRAA-
-AGTAATTAAC
 G A T C C G T A A T C G A C G T G C T A G T C A A C G T C T G A C T G A C T G A A C G T
A C G T C T G A T A C G G A C T T G C A G T C A C A G T A G C T C T G A C G T A T G A C

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:3
Score:0.77
Offset:2
Orientation:forward strand
Alignment:CAGTAATRAA--
--GTCATAAAAN
 G A T C C G T A A T C G A C G T G C T A G T C A A C G T C T G A C T G A C T G A A C G T A C G T
A C G T A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

CDX1/MA0878.1/Jaspar

Match Rank:4
Score:0.76
Offset:2
Orientation:forward strand
Alignment:CAGTAATRAA-
--GCAATAAAA
 G A T C C G T A A T C G A C G T G C T A G T C A A C G T C T G A C T G A C T G A A C G T
A C G T A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A

PH0120.1_Nkx6-3/Jaspar

Match Rank:5
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--CAGTAATRAA-----
CNNANTAATTAATTNNC
 A C G T A C G T G A T C C G T A A T C G A C G T G C T A G T C A A C G T C T G A C T G A C T G A A C G T A C G T A C G T A C G T A C G T
T G A C T C G A T G C A T C G A A C T G G A C T T G C A C G T A G A C T G A C T C T G A G C T A C G A T C G A T C G A T A C G T G A T C

MNX1/MA0707.1/Jaspar

Match Rank:6
Score:0.74
Offset:1
Orientation:forward strand
Alignment:CAGTAATRAA-
-GGTAATTAAA
 G A T C C G T A A T C G A C G T G C T A G T C A A C G T C T G A C T G A C T G A A C G T
A C G T C T A G T A C G A G C T G T C A G T C A G A C T C G A T C G T A C G T A G T C A

PH0013.1_Cdx2/Jaspar

Match Rank:7
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--CAGTAATRAA----
AAAGGTAATAAAATTT
 A C G T A C G T G A T C C G T A A T C G A C G T G C T A G T C A A C G T C T G A C T G A C T G A A C G T A C G T A C G T A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

CDX2/MA0465.1/Jaspar

Match Rank:8
Score:0.73
Offset:0
Orientation:forward strand
Alignment:CAGTAATRAA-
AAGCCATAAAA
 G A T C C G T A A T C G A C G T G C T A G T C A A C G T C T G A C T G A C T G A A C G T
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A

Hoxd9/MA0913.1/Jaspar

Match Rank:9
Score:0.73
Offset:2
Orientation:forward strand
Alignment:CAGTAATRAA--
--GCAATAAAAA
 G A T C C G T A A T C G A C G T G C T A G T C A A C G T C T G A C T G A C T G A A C G T A C G T
A C G T A C G T T C A G G A T C T G C A C T G A C G A T G C T A G C T A G C T A C G T A G C T A

PH0046.1_Hoxa10/Jaspar

Match Rank:10
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-CAGTAATRAA-----
TAGGTAATAAAATTCA
 A C G T G A T C C G T A A T C G A C G T G C T A G T C A A C G T C T G A C T G A C T G A A C G T A C G T A C G T A C G T A C G T
C A G T G T C A A C T G T C A G G A C T G T C A C T G A G C A T C G T A C G T A G C T A G C T A G C A T C A G T G T A C C G T A