Information for 4-AGACAKTAATTYTTCC (Motif 4)

C T G A A C T G G T C A A G T C C G T A A C T G A C G T T C G A G T C A A G C T C G A T A G T C C G A T A C G T G T A C A G T C
Reverse Opposite:
C T A G A C T G T G C A C G T A T C A G C G T A C T G A A C G T A G C T C G T A G T A C C G A T A C T G A C G T A G T C A G C T
p-value:1e-13
log p-value:-3.128e+01
Information Content per bp:1.787
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.09%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets41.0 +/- 25.6bp
Average Position of motif in Background39.3 +/- 31.2bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--AGACAKTAATTYTTCC
CCAGACAG----------
 A C G T A C G T C T G A A C T G G T C A A G T C C G T A A C T G A C G T T C G A G T C A A G C T C G A T A G T C C G A T A C G T G T A C A G T C
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MF0010.1_Homeobox_class/Jaspar

Match Rank:2
Score:0.56
Offset:4
Orientation:forward strand
Alignment:AGACAKTAATTYTTCC
----AATAATT-----
 C T G A A C T G G T C A A G T C C G T A A C T G A C G T T C G A G T C A A G C T C G A T A G T C C G A T A C G T G T A C A G T C
A C G T A C G T A C G T A C G T G C T A C G T A G C A T C T G A C T G A C G A T C G A T A C G T A C G T A C G T A C G T A C G T

Hoxd8/MA0910.1/Jaspar

Match Rank:3
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-AGACAKTAATTYTTCC
NAGCCATTAATTANTTA
 A C G T C T G A A C T G G T C A A G T C C G T A A C T G A C G T T C G A G T C A A G C T C G A T A G T C C G A T A C G T G T A C A G T C
C G A T G C T A C T A G G A T C G A T C C T G A C G A T G C A T C G T A C G T A C G A T C A G T C T G A G C A T G A C T C G A T G T C A

PH0080.1_Hoxd8/Jaspar

Match Rank:4
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-AGACAKTAATTYTTCC
NAGCCATTAATTANTTA
 A C G T C T G A A C T G G T C A A G T C C G T A A C T G A C G T T C G A G T C A A G C T C G A T A G T C C G A T A C G T G T A C A G T C
C G A T G C T A C T A G G A T C G A T C C T G A C G A T G C A T C G T A C G T A C G A T C A G T C T G A G C A T G A C T C G A T G T C A

HOXA5/MA0158.1/Jaspar

Match Rank:5
Score:0.55
Offset:3
Orientation:forward strand
Alignment:AGACAKTAATTYTTCC
---CACTAATT-----
 C T G A A C T G G T C A A G T C C G T A A C T G A C G T T C G A G T C A A G C T C G A T A G T C C G A T A C G T G T A C A G T C
A C G T A C G T A C G T G T A C C T G A A T G C C G A T C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:6
Score:0.55
Offset:-7
Orientation:forward strand
Alignment:-------AGACAKTAATTYTTCC
CAAATCCAGACATCACA------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A A C T G G T C A A G T C C G T A A C T G A C G T T C G A G T C A A G C T C G A T A G T C C G A T A C G T G T A C A G T C
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A A C G T A C G T A C G T A C G T A C G T A C G T

Sox17/MA0078.1/Jaspar

Match Rank:7
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:AGACAKTAATTYTTCC
-GACAATGNN------
 C T G A A C T G G T C A A G T C C G T A A C T G A C G T T C G A G T C A A G C T C G A T A G T C C G A T A C G T G T A C A G T C
A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:8
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-AGACAKTAATTYTTCC
TTGACAG----------
 A C G T C T G A A C T G G T C A A G T C C G T A A C T G A C G T T C G A G T C A A G C T C G A T A G T C C G A T A C G T G T A C A G T C
G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Lhx3/MA0135.1/Jaspar

Match Rank:9
Score:0.53
Offset:2
Orientation:forward strand
Alignment:AGACAKTAATTYTTCC
--AAATTAATTAATC-
 C T G A A C T G G T C A A G T C C G T A A C T G A C G T T C G A G T C A A G C T C G A T A G T C C G A T A C G T G T A C A G T C
A C G T A C G T C G T A T C G A C G T A A C G T A C G T C G T A C G T A G A C T A G C T G C T A C G T A G A C T A G T C A C G T

PH0073.1_Hoxc9/Jaspar

Match Rank:10
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---AGACAKTAATTYTTCC
GGAGGTCATTAATTAT---
 A C G T A C G T A C G T C T G A A C T G G T C A A G T C C G T A A C T G A C G T T C G A G T C A A G C T C G A T A G T C C G A T A C G T G T A C A G T C
T C A G C A T G T C G A C T A G T C A G G A C T G T A C C T G A G C A T G C A T C G T A G C T A G A C T G A C T C G T A A C G T A C G T A C G T A C G T