Information for 9-TAGGTCATAK (Motif 32)

C A G T C G T A A C T G A C T G A G C T A T G C G T C A A C G T C G T A A C T G
Reverse Opposite:
G T A C C G A T G T C A A C G T A T C G C T G A G T A C T G A C C G A T G T C A
p-value:1e-6
log p-value:-1.587e+01
Information Content per bp:1.663
Number of Target Sequences with motif49.0
Percentage of Target Sequences with motif7.62%
Number of Background Sequences with motif1644.3
Percentage of Background Sequences with motif3.34%
Average Position of motif in Targets51.2 +/- 24.3bp
Average Position of motif in Background48.8 +/- 27.8bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:1
Score:0.71
Offset:1
Orientation:forward strand
Alignment:TAGGTCATAK
-AGGTCA---
 C A G T C G T A A C T G A C T G A G C T A T G C G T C A A C G T C G T A A C T G
A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-TAGGTCATAK
TRAGGTCA---
 A C G T C A G T C G T A A C T G A C T G A G C T A T G C G T C A A C G T C G T A A C T G
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:3
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---TAGGTCATAK
ATCAAGGTCA---
 A C G T A C G T A C G T C A G T C G T A A C T G A C T G A G C T A T G C G T C A A C G T C G T A A C T G
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:4
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---TAGGTCATAK
AAYTAGGTCA---
 A C G T A C G T A C G T C A G T C G T A A C T G A C T G A G C T A T G C G T C A A C G T C G T A A C T G
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:5
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TAGGTCATAK
AGRGGTCA---
 A C G T C A G T C G T A A C T G A C T G A G C T A T G C G T C A A C G T C G T A A C T G
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T

ESRRB/MA0141.3/Jaspar

Match Rank:6
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--TAGGTCATAK
TCAAGGTCATA-
 A C G T A C G T C A G T C G T A A C T G A C T G A G C T A T G C G T C A A C G T C G T A A C T G
G A C T T A G C G C T A T C G A T C A G A T C G A G C T G A T C C T G A G C A T G C T A A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:7
Score:0.64
Offset:-6
Orientation:forward strand
Alignment:------TAGGTCATAK
TATAAGTAGGTCAA--
 A C G T A C G T A C G T A C G T A C G T A C G T C A G T C G T A A C T G A C T G A G C T A T G C G T C A A C G T C G T A A C T G
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TAGGTCATAK
TCAAGGTCAN--
 A C G T A C G T C A G T C G T A A C T G A C T G A G C T A T G C G T C A A C G T C G T A A C T G
A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T A C G T

Esrrg/MA0643.1/Jaspar

Match Rank:9
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TAGGTCATAK
TCAAGGTCAT--
 A C G T A C G T C A G T C G T A A C T G A C T G A G C T A T G C G T C A A C G T C G T A A C T G
G A C T T A G C C T G A T C G A C A T G A T C G C A G T A G T C C T G A G C A T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TAGGTCATAK
CAAAGGTCAG--
 A C G T A C G T C A G T C G T A A C T G A C T G A G C T A T G C G T C A A C G T C G T A A C T G
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T