Information for 4-AACATGCATCACA (Motif 17)

C T G A C G T A G A T C C G T A C A G T A T C G T A G C C G T A A G C T G A T C C G T A A T G C G C T A
Reverse Opposite:
C G A T T A C G A C G T C T A G C T G A C G A T A T C G T A G C G T C A C G A T C T A G G C A T A G C T
p-value:1e-10
log p-value:-2.371e+01
Information Content per bp:1.694
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.64%
Number of Background Sequences with motif154.2
Percentage of Background Sequences with motif0.31%
Average Position of motif in Targets46.6 +/- 19.7bp
Average Position of motif in Background51.5 +/- 27.7bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:1
Score:0.67
Offset:0
Orientation:forward strand
Alignment:AACATGCATCACA
GYCATCMATCAT-
 C T G A C G T A G A T C C G T A C A G T A T C G T A G C C G T A A G C T G A T C C G T A A T G C G C T A
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T A C G T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:2
Score:0.64
Offset:1
Orientation:forward strand
Alignment:AACATGCATCACA
-TCATCAATCA--
 C T G A C G T A G A T C C G T A C A G T A T C G T A G C C G T A A G C T G A T C C G T A A T G C G C T A
A C G T G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A A C G T A C G T

PH0134.1_Pbx1/Jaspar

Match Rank:3
Score:0.61
Offset:1
Orientation:forward strand
Alignment:AACATGCATCACA-----
-TCACCCATCAATAAACA
 C T G A C G T A G A T C C G T A C A G T A T C G T A G C C G T A A G C T G A T C C G T A A T G C G C T A A C G T A C G T A C G T A C G T A C G T
A C G T G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A

PB0178.1_Sox8_2/Jaspar

Match Rank:4
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AACATGCATCACA--
-ACATTCATGACACG
 C T G A C G T A G A T C C G T A C A G T A T C G T A G C C G T A A G C T G A T C C G T A A T G C G C T A A C G T A C G T
A C G T C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:5
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:AACATGCATCACA
--ATTGCATCAK-
 C T G A C G T A G A T C C G T A C A G T A T C G T A G C C G T A A G C T G A T C C G T A A T G C G C T A
A C G T A C G T T C G A A C G T A C G T C T A G A G T C T C G A G C A T G T A C C T G A A C G T A C G T

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:6
Score:0.58
Offset:2
Orientation:forward strand
Alignment:AACATGCATCACA
--ATTGCATCAT-
 C T G A C G T A G A T C C G T A C A G T A T C G T A G C C G T A A G C T G A T C C G T A A T G C G C T A
A C G T A C G T T C G A G C A T A C G T C T A G G T A C T C G A G C A T T G A C T C G A A C G T A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-AACATGCATCACA
GAATATTCAT----
 A C G T C T G A C G T A G A T C C G T A C A G T A T C G T A G C C G T A A G C T G A T C C G T A A T G C G C T A
T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T A C G T A C G T A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AACATGCATCACA
GCCATAAATCA--
 C T G A C G T A G A T C C G T A C A G T A T C G T A G C C G T A A G C T G A T C C G T A A T G C G C T A
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T A C G T

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:AACATGCATCACA
---TTGCAACATN
 C T G A C G T A G A T C C G T A C A G T A T C G T A G C C G T A A G C T G A T C C G T A A T G C G C T A
A C G T A C G T A C G T C A G T A C G T C T A G A G T C G T C A C G T A G A T C G C T A A G C T G A T C

PBX1/MA0070.1/Jaspar

Match Rank:10
Score:0.57
Offset:1
Orientation:forward strand
Alignment:AACATGCATCACA
-CCATCAATCAAA
 C T G A C G T A G A T C C G T A C A G T A T C G T A G C C G T A A G C T G A T C C G T A A T G C G C T A
A C G T G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A