Information for 10-CCAGACACATAGTGCA (Motif 11)

A G T C A G T C C T G A A C T G C G T A A G T C C G T A A G T C G T C A C G A T C G T A A C T G A C G T A C T G A G T C G C T A
Reverse Opposite:
C G A T A C T G G T A C C G T A G T A C C G A T C G T A A C G T A C T G A C G T A C T G A C G T G T A C G A C T C T A G A C T G
p-value:1e-11
log p-value:-2.651e+01
Information Content per bp:1.909
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets62.0 +/- 18.2bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CCAGACACATAGTGCA
CCAGACAG--------
 A G T C A G T C C T G A A C T G C G T A A G T C C G T A A G T C G T C A C G A T C G T A A C T G A C G T A C T G A G T C G C T A
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----CCAGACACATAGTGCA
CAAATCCAGACATCACA----
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C T G A A C T G C G T A A G T C C G T A A G T C G T C A C G A T C G T A A C T G A C G T A C T G A G T C G C T A
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CCAGACACATAGTGCA
CCAGACRSVB------
 A G T C A G T C C T G A A C T G C G T A A G T C C G T A A G T C G T C A C G A T C G T A A C T G A C G T A C T G A G T C G C T A
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T A C G T A C G T A C G T

ZNF143/MA0088.2/Jaspar

Match Rank:4
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CCAGACACATAGTGCA---
---TACCCACAATGCATTG
 A G T C A G T C C T G A A C T G C G T A A G T C C G T A A G T C G T C A C G A T C G T A A C T G A C G T A C T G A G T C G C T A A C G T A C G T A C G T
A C G T A C G T A C G T A G C T C G T A G T A C G T A C A G T C C T G A A G T C T C G A C T G A C G A T T C A G A G T C G T C A G A C T G A C T C T A G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CCAGACACATAGTGCA
BCAGACWA--------
 A G T C A G T C C T G A A C T G C G T A A G T C C G T A A G T C G T C A C G A T C G T A A C T G A C G T A C T G A G T C G C T A
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:6
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---CCAGACACATAGTGCA
ATGCCAGACN---------
 A C G T A C G T A C G T A G T C A G T C C T G A A C T G C G T A A G T C C G T A A G T C G T C A C G A T C G T A A C T G A C G T A C T G A G T C G C T A
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0146.1_Mafk_2/Jaspar

Match Rank:7
Score:0.52
Offset:4
Orientation:forward strand
Alignment:CCAGACACATAGTGCA---
----GAAAAAATTGCAAGG
 A G T C A G T C C T G A A C T G C G T A A G T C C G T A A G T C G T C A C G A T C G T A A C T G A C G T A C T G A G T C G C T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C A G G T C A T C G A C T G A C T G A G C T A G C T A C A G T A G C T C A T G A G T C T G C A G T C A A T C G T C A G

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:8
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:CCAGACACATAGTGCA-
--GVACAGNMTGTYCTB
 A G T C A G T C C T G A A C T G C G T A A G T C C G T A A G T C G T C A C G A T C G T A A C T G A C G T A C T G A G T C G C T A A C G T
A C G T A C G T C T A G T C G A C G T A T A G C C G T A C A T G C G T A T G A C G C A T T A C G G A C T A G C T G A T C G A C T A C T G

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:9
Score:0.50
Offset:0
Orientation:forward strand
Alignment:CCAGACACATAGTGCA
CANAGNNCAAAGTCCA
 A G T C A G T C C T G A A C T G C G T A A G T C C G T A A G T C G T C A C G A T C G T A A C T G A C G T A C T G A G T C G C T A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

SCRT1/MA0743.1/Jaspar

Match Rank:10
Score:0.50
Offset:2
Orientation:reverse strand
Alignment:CCAGACACATAGTGCA-
--ANCCACCTGTTGCNC
 A G T C A G T C C T G A A C T G C G T A A G T C C G T A A G T C G T C A C G A T C G T A A C T G A C G T A C T G A G T C G C T A A C G T
A C G T A C G T C T G A T C G A T G A C G T A C T C G A G T A C G A T C A C G T A C T G A C G T C A G T C T A G T G A C C G A T A G T C