Information for 3-AAAGGCCAGC (Motif 6)

C G T A T C G A T C G A C A T G A C T G A G T C G T A C C T G A A C T G G T A C
Reverse Opposite:
C A T G T G A C G A C T C A T G T C A G T G A C G T A C A G C T A G C T G C A T
p-value:1e-11
log p-value:-2.596e+01
Information Content per bp:1.657
Number of Target Sequences with motif52.0
Percentage of Target Sequences with motif5.66%
Number of Background Sequences with motif899.7
Percentage of Background Sequences with motif1.87%
Average Position of motif in Targets51.8 +/- 25.4bp
Average Position of motif in Background50.9 +/- 28.1bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.80
Offset:-1
Orientation:forward strand
Alignment:-AAAGGCCAGC
CAAAGGTCAG-
 A C G T C G T A T C G A T C G A C A T G A C T G A G T C G T A C C T G A A C T G G T A C
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:2
Score:0.79
Offset:-4
Orientation:reverse strand
Alignment:----AAAGGCCAGC
ANGNAAAGGTCA--
 A C G T A C G T A C G T A C G T C G T A T C G A T C G A C A T G A C T G A G T C G T A C C T G A A C T G G T A C
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A A C G T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:3
Score:0.77
Offset:-4
Orientation:forward strand
Alignment:----AAAGGCCAGC--
TCTCAAAGGTCACCTG
 A C G T A C G T A C G T A C G T C G T A T C G A T C G A C A T G A C T G A G T C G T A C C T G A A C T G G T A C A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

PB0049.1_Nr2f2_1/Jaspar

Match Rank:4
Score:0.76
Offset:-4
Orientation:forward strand
Alignment:----AAAGGCCAGC--
TCTCAAAGGTCACGAG
 A C G T A C G T A C G T A C G T C G T A T C G A T C G A C A T G A C T G A G T C G T A C C T G A A C T G G T A C A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:5
Score:0.74
Offset:0
Orientation:forward strand
Alignment:AAAGGCCAGC
CAAGGHCANV
 C G T A T C G A T C G A C A T G A C T G A G T C G T A C C T G A A C T G G T A C
T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

NR4A2/MA0160.1/Jaspar

Match Rank:6
Score:0.72
Offset:1
Orientation:forward strand
Alignment:AAAGGCCAGC
-AAGGTCAC-
 C G T A T C G A T C G A C A T G A C T G A G T C G T A C C T G A A C T G G T A C
A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:7
Score:0.72
Offset:-5
Orientation:forward strand
Alignment:-----AAAGGCCAGC
AAGTTCAAGGTCAGC
 A C G T A C G T A C G T A C G T A C G T C G T A T C G A T C G A C A T G A C T G A G T C G T A C C T G A A C T G G T A C
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C

HNF4G/MA0484.1/Jaspar

Match Rank:8
Score:0.70
Offset:-7
Orientation:forward strand
Alignment:-------AAAGGCCAGC
AGAGTCCAAAGTCCA--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A T C G A T C G A C A T G A C T G A G T C G T A C C T G A A C T G G T A C
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-AAAGGCCAGC
TCAAGGTCAN-
 A C G T C G T A T C G A T C G A C A T G A C T G A G T C G T A C C T G A A C T G G T A C
A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:10
Score:0.70
Offset:0
Orientation:forward strand
Alignment:AAAGGCCAGC
TRAGGTCA--
 C G T A T C G A T C G A C A T G A C T G A G T C G T A C C T G A A C T G G T A C
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T