Information for 5-GAGTCTGCTGGAC (Motif 17)

A C T G C G T A A C T G A C G T A G T C A C G T A C T G A G T C A C G T A C T G A T C G C T G A A G T C
Reverse Opposite:
A C T G A G C T A T G C A G T C C G T A A C T G A G T C C G T A C T A G C G T A A G T C C G A T A G T C
p-value:1e-7
log p-value:-1.777e+01
Information Content per bp:1.921
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.55%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets36.0 +/- 18.2bp
Average Position of motif in Background37.3 +/- 47.1bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GAGTCTGCTGGAC
VBSYGTCTGG-----
 A C G T A C G T A C T G C G T A A C T G A C G T A G T C A C G T A C T G A G T C A C G T A C T G A T C G C T G A A G T C
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GAGTCTGCTGGAC
TWGTCTGV-----
 A C T G C G T A A C T G A C G T A G T C A C G T A C T G A G T C A C G T A C T G A T C G C T G A A G T C
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T

PB0130.1_Gm397_2/Jaspar

Match Rank:3
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----GAGTCTGCTGGAC
NNGCGTGTGTGCNGCN-
 A C G T A C G T A C G T A C G T A C T G C G T A A C T G A C G T A G T C A C G T A C T G A G T C A C G T A C T G A T C G C T G A A G T C
C A G T A C G T C T A G T G A C C A T G A C G T T A C G A G C T C A T G A G C T A C T G A G T C A G T C C A T G A G T C G A C T A C G T

PB0203.1_Zfp691_2/Jaspar

Match Rank:4
Score:0.58
Offset:-7
Orientation:reverse strand
Alignment:-------GAGTCTGCTGGAC
NTNNNAGGAGTCTCNTN---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G A C G T A G T C A C G T A C T G A G T C A C G T A C T G A T C G C T G A A G T C
A T C G C A G T A C G T G C T A C T A G C T G A A C T G A C T G C G T A A T C G A G C T G T A C G C A T T G A C T A C G G A C T G T C A A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GAGTCTGCTGGAC
CTGTCTGG-----
 A C T G C G T A A C T G A C G T A G T C A C G T A C T G A G T C A C G T A C T G A T C G C T G A A G T C
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T

ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GAGTCTGCTGGAC----
--GTCWGCTGTYYCTCT
 A C T G C G T A A C T G A C G T A G T C A C G T A C T G A G T C A C G T A C T G A T C G C T G A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T C T A G A C G T A G T C C G T A A C T G A G T C G C A T A C T G G C A T A G T C G A C T G A T C G C A T A G T C A G C T

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:7
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GAGTCTGCTGGAC
-NAHCAGCTGD--
 A C T G C G T A A C T G A C G T A G T C A C G T A C T G A G T C A C G T A C T G A T C G C T G A A G T C
A C G T G T C A T G C A G C T A A G T C C G T A A C T G T G A C G C A T T C A G C A G T A C G T A C G T

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:8
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GAGTCTGCTGGAC
TGAGTCAGCA----
 A C G T A C T G C G T A A C T G A C G T A G T C A C G T A C T G A G T C A C G T A C T G A T C G C T G A A G T C
G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T A C G T A C G T A C G T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:GAGTCTGCTGGAC
----CAGCTGNT-
 A C T G C G T A A C T G A C G T A G T C A C G T A C T G A G T C A C G T A C T G A T C G C T G A A G T C
A C G T A C G T A C G T A C G T G T A C C G T A A C T G T G A C C G A T A C T G A G T C G A C T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:10
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:GAGTCTGCTGGAC
-----NGCTN---
 A C T G C G T A A C T G A C G T A G T C A C G T A C T G A G T C A C G T A C T G A T C G C T G A A G T C
A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T