Information for 5-TCCAGAARAATGC (Motif 4)

A C G T A G T C A G T C C G T A A T C G C G T A C G T A T C A G C G T A C G T A A C G T A C T G A T G C
Reverse Opposite:
A T C G A G T C C G T A A C G T A C G T A G C T A C G T C G A T A T G C A C G T A C T G A C T G C G T A
p-value:1e-13
log p-value:-3.092e+01
Information Content per bp:1.933
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets70.7 +/- 17.3bp
Average Position of motif in Background19.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox6/MA0515.1/Jaspar

Match Rank:1
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:TCCAGAARAATGC
---AAAACAATGG
 A C G T A G T C A G T C C G T A A T C G C G T A C G T A T C A G C G T A C G T A A C G T A C T G A T G C
A C G T A C G T A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:2
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:TCCAGAARAATGC
---VRAACAATGG
 A C G T A G T C A G T C C G T A A T C G C G T A C G T A T C A G C G T A C G T A A C G T A C T G A T G C
A C G T A C G T A C G T T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G

PB0067.1_Sox18_1/Jaspar

Match Rank:3
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TCCAGAARAATGC--
NNTNANAACAATTNNA
 A C G T A C G T A G T C A G T C C G T A A T C G C G T A C G T A T C A G C G T A C G T A A C G T A C T G A T G C A C G T A C G T
C G A T C A G T G C A T C A G T C G T A T C A G C G T A G C T A A G T C G C T A C G T A C G A T C A G T T C A G C G T A T C G A

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:4
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TCCAGAARAATGC
ATGCCAGACN-----
 A C G T A C G T A C G T A G T C A G T C C G T A A T C G C G T A C G T A T C A G C G T A C G T A A C G T A C T G A T G C
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T A C G T A C G T

PB0146.1_Mafk_2/Jaspar

Match Rank:5
Score:0.57
Offset:2
Orientation:forward strand
Alignment:TCCAGAARAATGC----
--GAAAAAATTGCAAGG
 A C G T A G T C A G T C C G T A A T C G C G T A C G T A T C A G C G T A C G T A A C G T A C T G A T G C A C G T A C G T A C G T A C G T
A C G T A C G T T C A G G T C A T C G A C T G A C T G A G C T A G C T A C A G T A G C T C A T G A G T C T G C A G T C A A T C G T C A G

PB0074.1_Sox8_1/Jaspar

Match Rank:6
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TCCAGAARAATGC----
TNNAGAACAATANATNN
 A C G T A G T C A G T C C G T A A T C G C G T A C G T A T C A G C G T A C G T A A C G T A C T G A T G C A C G T A C G T A C G T A C G T
G C A T G C T A G T C A C G T A C A T G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C A T G T C A G T A C

PB0062.1_Sox12_1/Jaspar

Match Rank:7
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TCCAGAARAATGC
NTTNAGAACAATTA
 A C G T A C G T A G T C A G T C C G T A A T C G C G T A C G T A T C A G C G T A C G T A A C G T A C T G A T G C
C A T G C G A T C G A T C A G T C G T A A C T G C T G A G C T A A G T C G C T A C G T A G C A T C G A T C T G A

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:TCCAGAARAATGC-
----GAACAATGGN
 A C G T A G T C A G T C C G T A A T C G C G T A C G T A T C A G C G T A C G T A A C G T A C T G A T G C A C G T
A C G T A C G T A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:9
Score:0.56
Offset:4
Orientation:forward strand
Alignment:TCCAGAARAATGC-
----RAACAATGGN
 A C G T A G T C A G T C C G T A A T C G C G T A C G T A T C A G C G T A C G T A A C G T A C T G A T G C A C G T
A C G T A C G T A C G T A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---TCCAGAARAATGC
ATTTGCATAACAATG-
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A A T C G C G T A C G T A T C A G C G T A C G T A A C G T A C T G A T G C
G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G A C G T