Information for 11-TGTGTCAGAG (Motif 20)

A G C T A C T G A C G T C T A G G A C T A T G C C G T A T A C G C G T A A C T G
Reverse Opposite:
G T A C A C G T A G T C C G A T A T C G C T G A G A T C G T C A G T A C T C G A
p-value:1e-7
log p-value:-1.755e+01
Information Content per bp:1.822
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif2.73%
Number of Background Sequences with motif321.4
Percentage of Background Sequences with motif0.66%
Average Position of motif in Targets57.0 +/- 22.5bp
Average Position of motif in Background49.8 +/- 30.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MEIS1/MA0498.2/Jaspar

Match Rank:1
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:TGTGTCAGAG
-NTGTCAN--
 A G C T A C T G A C G T C T A G G A C T A T G C C G T A T A C G C G T A A C T G
A C G T G A T C G A C T C T A G A C G T A T G C C G T A C G T A A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-TGTGTCAGAG-
AGGTGHCAGACA
 A C G T A G C T A C T G A C G T C T A G G A C T A T G C C G T A T A C G C G T A A C T G A C G T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

FOS::JUN/MA0099.2/Jaspar

Match Rank:3
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TGTGTCAGAG
TGAGTCA---
 A G C T A C T G A C G T C T A G G A C T A T G C C G T A T A C G C G T A A C T G
G A C T A T C G G C T A A C T G A C G T G T A C C T G A A C G T A C G T A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:4
Score:0.65
Offset:2
Orientation:forward strand
Alignment:TGTGTCAGAG
--TGTCANYT
 A G C T A C T G A C G T C T A G G A C T A T G C C G T A T A C G C G T A A C T G
A C G T A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:5
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TGTGTCAGAG
VBTGWCAGCB
 A G C T A C T G A C G T C T A G G A C T A T G C C G T A T A C G C G T A A C T G
T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TGTGTCAGAG--
AGGTGNCAGACAG
 A C G T A G C T A C T G A C G T C T A G G A C T A T G C C G T A T A C G C G T A A C T G A C G T A C G T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:7
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TGTGTCAGAG
-YTGWCADY-
 A G C T A C T G A C G T C T A G G A C T A T G C C G T A T A C G C G T A A C T G
A C G T G A C T G C A T C T A G C G A T G A T C T C G A C A T G G A T C A C G T

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:8
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TGTGTCAGAG
AGGTGTGAAM-
 A C G T A G C T A C T G A C G T C T A G G A C T A T G C C G T A T A C G C G T A A C T G
C G T A C T A G C A T G A G C T A C T G C G A T A T C G C G T A G T C A G T C A A C G T

TBX2/MA0688.1/Jaspar

Match Rank:9
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TGTGTCAGAG
AAGGTGTGAAA-
 A C G T A C G T A G C T A C T G A C G T C T A G G A C T A T G C C G T A T A C G C G T A A C T G
C G T A C T G A T C A G A T C G A G C T C T A G G A C T A C T G C T G A C G T A C G T A A C G T

PH0164.1_Six4/Jaspar

Match Rank:10
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----TGTGTCAGAG--
TNNNNGGTGTCATNTNT
 A C G T A C G T A C G T A C G T A C G T A G C T A C T G A C G T C T A G G A C T A T G C C G T A T A C G C G T A A C T G A C G T A C G T
A G C T T C A G T C G A C A G T C T G A T C A G A C T G A C G T C T A G A C G T G T A C C T G A C G A T C A G T G A C T G T C A C A G T